Evidence map›Paper›PMID 16789826›Full record

ArticlePLoS genetics2006

Who ate whom? Adaptive Helicobacter genomic changes that accompanied a host jump from early humans to large felines.

Mark Eppinger, Claudia Baar, Bodo Linz, Günter Raddatz, Christa Lanz, Heike Keller, Giovanna Morelli, Helga Gressmann, Mark Achtman, Stephan C Schuster

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 97 papers.

0numbers the graph read from it
0cells of the map it votes in
97citing papers in PubMed
13.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

97 citing papers in PubMed, 170 citations in OpenAlex.

  1. Trial
  2. Microbiology and molecular biology reviews : MMBR · 2026
    Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Article
  9. Article
  10. Pathogenomics of Helicobacter pylori.Current topics in microbiology and immunology · 2023
    Review
  11. Article
  12. A Tripartite Efflux System Affects Flagellum Stability inInternational journal of molecular sciences · 2022
    Article
  13. THE EXPOSOME IN HUMAN EVOLUTION: FROM DUST TO DIESEL.The Quarterly review of biology · 2019
    Article
  14. Understanding the emergence of bacterial pathogens in novel hosts.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2019
    Article
  15. Article
  16. Living in Cold Blood:Frontiers in microbiology · 2019
    Review
  17. Article
  18. Article
  19. Article
  20. Relating Phage Genomes toInternational journal of molecular sciences · 2018
    Review

37 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Mark EppingerDepartment of Biochemistry and Molecular Biology, Center for Comparative Genomics and Bioinformatics, Pennsylvania State University, University Park, Pennsylvania, USA.
Claudia Baar
Bodo Linz
Günter Raddatz
Christa Lanz
Heike Keller
Giovanna Morelli
Helga Gressmann
Mark Achtman
Stephan C Schuster
Max Planck Institute for Developmental Biology · DEMax Planck Institute for Infection Biology · DEPennsylvania State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Helicobacter pylori infection of humans is so old that its population genetic structure reflects that of ancient human migrations. A closely related species, Helicobacter acinonychis, is specific for large felines, including cheetahs, lions, and tigers, whereas hosts more closely related to humans harbor more distantly related Helicobacter species. This observation suggests a jump between host species. But who ate whom and when did it happen? In order to resolve this question, we determined the genomic sequence of H. acinonychis strain Sheeba and compared it to genomes from H. pylori. The conserved core genes between the genomes are so similar that the host jump probably occurred within the last 200,000 (range 50,000-400,000) years. However, the Sheeba genome also possesses unique features that indicate the direction of the host jump, namely from early humans to cats. Sheeba possesses an unusually large number of highly fragmented genes, many encoding outer membrane proteins, which may have been destroyed in order to bypass deleterious responses from the feline host immune system. In addition, the few Sheeba-specific genes that were found include a cluster of genes encoding sialylation of the bacterial cell surface carbohydrates, which were imported by horizontal genetic exchange and might also help to evade host immune defenses. These results provide a genomic basis for elucidating molecular events that allow bacteria to adapt to novel animal hosts.

Indexed as

AcinonyxHelicobacterLionsTigersAnimalsBacterial Outer Membrane ProteinsBacterial Physiological PhenomenaCarbohydratesCell MembraneGenome, BacterialHelicobacter InfectionsHelicobacter pyloriHumansSpecies SpecificityBacterial Outer Membrane ProteinsCarbohydrates

Identifiers

PMID16789826
PMCPMC1523251
OpenAlexW2093692587

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.