Evidence map›Paper›PMID 16789825›Full record

ArticlePLoS genetics2006

Genetic screens for mutations affecting development of Xenopus tropicalis.

Tadahiro Goda, Anita Abu-Daya, Samantha Carruthers, Matthew D Clark, Derek L Stemple, Lyle B Zimmerman

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.

0numbers the graph read from it
0cells of the map it votes in
34citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

34 citing papers in PubMed, 70 citations in OpenAlex.

  1. Producing Gynogenetic Embryos in Xenopus tropicalis.Methods in molecular biology (Clifton, N.J.) · 2026
    Article
  2. CRISPR/Cas9 Gene Disruption Studies in FMethods in molecular biology (Clifton, N.J.) · 2023
    Article
  3. Article
  4. Article
  5. Article
  6. Transient window of resilience during early development minimizes teratogenic effects of heat in zebrafish embryos.Developmental dynamics : an official publication of the American Association of Anatomists · 2018
    Article
  7. Article
  8. Imaging MyelinationBrain plasticity (Amsterdam, Netherlands) · 2016
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Sp8 regulates inner ear development.Proceedings of the National Academy of Sciences of the United States of America · 2014
    Article
  14. Article
  15. Article
  16. Biomechanics of early cardiac development.Biomechanics and modeling in mechanobiology · 2012
    Article
  17. The hitchhiker's guide to Xenopus genetics.Genesis (New York, N.Y. : 2000) · 2012
    Review
  18. Article
  19. Genetic analysis of Xenopus tropicalis.Methods in molecular biology (Clifton, N.J.) · 2012
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Tadahiro GodaDivision of Developmental Biology, National Institute for Medical Research, The Ridgeway, Mill Hill, London, United Kingdom.
Anita Abu-Daya
Samantha Carruthers
Matthew D Clark
Derek L Stemple
Lyle B Zimmerman
Wellcome Sanger Institute · GB

Funding

Genetic Screens in Xenopus tropicalisR01HD042276 · NICHD · SANGER INSTITUTE · PI STEMPLE, DEREK L · 2002 to 2004
$405k
Medical Research Council MC_U117560482NICHD NIH HHS 1 R01 HD4 2276-01NICHD NIH HHS R01 HD042276Wellcome Trust
6 · The paper itself

Abstract

We present here the results of forward and reverse genetic screens for chemically-induced mutations in Xenopus tropicalis. In our forward genetic screen, we have uncovered 77 candidate phenotypes in diverse organogenesis and differentiation processes. Using a gynogenetic screen design, which minimizes time and husbandry space expenditures, we find that if a phenotype is detected in the gynogenetic F2 of a given F1 female twice, it is highly likely to be a heritable abnormality (29/29 cases). We have also demonstrated the feasibility of reverse genetic approaches for obtaining carriers of mutations in specific genes, and have directly determined an induced mutation rate by sequencing specific exons from a mutagenized population. The Xenopus system, with its well-understood embryology, fate map, and gain-of-function approaches, can now be coupled with efficient loss-of-function genetic strategies for vertebrate functional genomics and developmental genetics.

Indexed as

MutationAnimal DiseasesAnimalsCongenital AbnormalitiesEmbryo, NonmammalianFemaleGenetic Complementation TestGenetic TestingGenomicsMutagensOvumPhenotypeXenopusMutagens

Identifiers

PMID16789825
PMCPMC1475704
OpenAlexW2052915489

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.