ArticleGenetics2006
Analyses of synteny between Arabidopsis thaliana and species in the Asteraceae reveal a complex network of small syntenic segments and major chromosomal rearrangements.
Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
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Who cites it
12 citing papers in PubMed.
- PISTILLATA paralogs in Tarenaya hassleriana have diverged in interaction specificity.BMC plant biology · 2018Article
- Comparative analysis of the radish genome based on a conserved ortholog set (COS) of Brassica.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2014Article
- Ancestral synteny shared between distantly-related plant species from the asterid (Coffea canephora and Solanum Sp.) and rosid (Vitis vinifera) clades.BMC genomics · 2012Article
- Development and bin mapping of a Rosaceae Conserved Ortholog Set (COS) of markers.BMC genomics · 2009Article
- Synteny of Prunus and other model plant species.BMC genomics · 2009Article
- The genomic architecture of disease resistance in lettuce.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2009Article
- SSRs and INDELs mined from the sunflower EST database: abundance, polymorphisms, and cross-taxa utility.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2008Article
- Transcriptomic identification of candidate genes involved in sunflower responses to chilling and salt stresses based on cDNA microarray analysis.BMC plant biology · 2008Article
- Diversity in conserved genes in tomato.BMC genomics · 2007Article
- A high-density, integrated genetic linkage map of lettuce (Lactuca spp.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Universal markers for comparative mapping and phylogenetic analysis in the Asteraceae (Compositae).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2007Article
- Comparative physical mapping between Oryza sativa (AA genome type) and O. punctata (BB genome type).Genetics · 2007Article
Corrections and comments
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Authors and funding
12 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Comparative genomic studies among highly divergent species have been problematic because reduced gene similarities make orthologous gene pairs difficult to identify and because colinearity is expected to be low with greater time since divergence from the last common ancestor. Nevertheless, synteny between divergent taxa in several lineages has been detected over short chromosomal segments. We have examined the level of synteny between the model species Arabidopsis thaliana and species in the Compositae, one of the largest and most diverse plant families. While macrosyntenic patterns covering large segments of the chromosomes are not evident, significant levels of local synteny are detected at a fine scale covering segments of 1-Mb regions of A. thaliana and regions of <5 cM in lettuce and sunflower. These syntenic patches are often not colinear, however, and form a network of regions that have likely evolved by duplications followed by differential gene loss.
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