Evidence map›Paper›PMID 16782886›Full record

ArticleMolecular and cellular biology2006

Human transcription elongation factor CA150 localizes to splicing factor-rich nuclear speckles and assembles transcription and splicing components into complexes through its amino and carboxyl regions.

Miguel Sánchez-Alvarez, Aaron C Goldstrohm, Mariano A Garcia-Blanco, Carlos Suñé

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
  2. Article
  3. Overexpression ofFrontiers in genetics · 2022
    Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. DNA methylation biomarker candidates for early detection of colon cancer.Tumour biology : the journal of the International Society for Oncodevelopmental Biology and Medicine · 2012
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 2 countries.

Miguel Sánchez-AlvarezDepartment of Molecular Biology, Instituto de Parasitología y Biomedicine, Parque Tecnológico de Ciencias de la Salud, Avenida del Conocimiento s/n, Armilla, 18100 Granada, Spain.
Aaron C Goldstrohm
Mariano A Garcia-Blanco
Carlos Suñé
Centro Nacional de Biotecnología · ESConsejo Superior de Investigaciones Científicas · ESDuke Medical Center · US

Funding

Connections between mRNA elongation and splicingR01GM071037 · NIGMS · DUKE UNIVERSITY · PI GARCIABLANCO, MARIANO A. · 2004 to 2007
$1.4M
NIGMS NIH HHS R01 GM071037NIGMS NIH HHS R01GM071037
6 · The paper itself

Abstract

The human transcription elongation factor CA150 contains three N-terminal WW domains and six consecutive FF domains. WW and FF domains, versatile modules that mediate protein-protein interactions, are found in nuclear proteins involved in transcription and splicing. CA150 interacts with the splicing factor SF1 and with the phosphorylated C-terminal repeat domain (CTD) of RNA polymerase II (RNAPII) through its WW and FF domains, respectively. WW and FF domains may, therefore, serve to link transcription and splicing components and play a role in coupling transcription and splicing in vivo. In the study presented here, we investigated the subcellular localization and association of CA150 with factors involved in pre-mRNA transcriptional elongation and splicing. Endogenous CA150 colocalized with nuclear speckles, and this was not affected either by inhibition of cellular transcription or by RNAPII CTD phosphorylation. FF domains are essential for the colocalization to speckles, while WW domains are not required for colocalization. We also performed biochemical assays to understand the role of WW and FF domains in mediating the assembly of transcription and splicing components into higher-order complexes. Transcription and splicing components bound to a region in the amino-terminal part of CA150 that contains the three WW domains; however, we identified a region of the C-terminal FF domains that was also critical. Our results suggest that sequences located at both the amino and carboxyl regions of CA150 are required to assemble transcription/splicing complexes, which may be involved in the coupling of those processes.

Indexed as

RNA SplicingTranscription, GeneticAmino Acid SequenceCell Nucleus StructuresCells, CulturedDNA-Binding ProteinsHumansMolecular Sequence DataProtein Interaction MappingProtein Structure, TertiaryRNA Polymerase IIRNA Splicing FactorsSequence DeletionTrans-ActivatorsTranscriptional Elongation FactorsTranscription FactorsDNA-Binding ProteinsRNA Polymerase IIRNA Splicing FactorsSF1 protein, humanTCERG1 protein, humanTrans-ActivatorsTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID16782886
PMCPMC1489151
OpenAlexW2107925055

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.