Evidence map›Paper›PMID 16774356›Full record

ArticleThe Journal of chemical physics2006

Effects of electric fields on proton transport through water chains.

Sergio A Hassan, Gerhard Hummer, Yong-Sok Lee

Open access · greenAbstract read
In one paragraph

Article in The Journal of chemical physics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 30 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Philosophy of voltage-gated proton channels.Journal of the Royal Society, Interface · 2014
    Review
  5. Single-file water in nanopores.Physical chemistry chemical physics : PCCP · 2011
    Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Sergio A HassanCenter for Molecular Modeling, DCB/CIT, National Institutes of Health, U.S. DHHS, Bethesda, Maryland 20892, USA. mago@helix.nih.gov
Gerhard Hummer
Yong-Sok Lee
National Institutes of Health · US

Funding

SIMULATING PROTEIN STRUCTURES, COMPLEXES, AND DYNAMICSZ01CT000265 · CIT · COMPUTER RESEARCH AND TECHNOLOGY · PI STEINBACH, PETER J · 1997 to 2008
$1.3M
Theory &simulation of protein dynamics, folding,&functZ01DK029033 · NIDDK · NATIONAL INSTITUTE OF DIABETES AND DIGESTIVE AND KIDNEY DISEASES · PI HUMMER, GERHARD · 2000 to 2008
$960k
CIT NIH HHS Z01 CT000265-09Intramural NIH HHS
6 · The paper itself

Abstract

Molecular dynamics simulations on quantum energy surfaces are carried out to study the effects of perturbing electric fields on proton transport (PT) in protonated water chains. As an idealized model of a hydrophobic cavity in the interior of a protein the water molecules are confined into a carbon nanotube (CNT). The water chain connects a hydrated hydronium ion (H3O+) at one end of the CNT and an imidazole molecule at the other end. Without perturbing electric fields PT from the hydronium proton donor to the imidazole acceptor occurs on a picosecond time scale. External perturbations to PT are created by electric fields of varying intensities, normal to the CNT axis, generated by a neutral pair of charges on the nanotube wall. For fields above approximately 0.5 VA, the hydronium ion is effectively trapped at the CNT center, and PT blocked. Fields of comparable strength are generated inside proteins by nearby polar/charged amino acids. At lower fields the system displays a rich dynamic behavior, where the excess charge shuttles back and forth along the water chain before reaching the acceptor group on the picosecond time scale. The effects of the perturbing field on the proton movement are analyzed in terms of structural and dynamic properties of the water chain. The implications of these observations on PT in biomolecular systems and its control by external perturbing fields are discussed.

Indexed as

Chemistry, PhysicalElectrochemistryImidazolesIonsModels, ChemicalMolecular ConformationNanotubes, CarbonOnium CompoundsOxygenProtonsQuantum TheoryTime FactorsWaterhydronium ionimidazoleImidazolesIonsNanotubes, CarbonOnium CompoundsOxygenProtonsWater

Identifiers

PMID16774356
PMCPMC1808339
OpenAlexW2095159847

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.