Evidence map›Paper›PMID 16772039›Full record

ArticleBMC infectious diseases2006

Usefulness of real time PCR for the differentiation and quantification of 652 and JP2 Actinobacillus actinomycetemcomitans genotypes in dental plaque and saliva.

Germano Orrù, Mario Francesco Marini, Maria Laura Ciusa, Daniela Isola, Marina Cotti, Marco Baldoni, Vincenzo Piras, Elisabetta Pisano, Caterina Montaldo

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 24 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
24citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

24 citing papers in PubMed, 1 synthesis or guideline pooled it, 43 citations in OpenAlex.

  1. Pooled it
  2. Periodontal health in teenagers treated with removable aligners and fixed orthodontic appliances.Journal of orofacial orthopedics = Fortschritte der Kieferorthopadie : Organ/official journal Deutsche Gesellschaft fur Kieferorthopadie · 2015
    Trial
  3. Occurrence ofMicroorganisms · 2024
    Article
  4. Carriage of the JP2 Genotype ofPathogens (Basel, Switzerland) · 2022
    Article
  5. Article
  6. Prevalence of JP2 and Non-JP2 Genotypes ofPathogens (Basel, Switzerland) · 2021
    Article
  7. Prevalence ofPathogens (Basel, Switzerland) · 2020
    Article
  8. The Best Peptidomimetic Strategies to Undercover Antibacterial Peptides.International journal of molecular sciences · 2020
    Review
  9. Characterization ofVaccines · 2020
    Article
  10. Article
  11. Article
  12. Genetic Variants Involved in Bipolar Disorder, a Rough Road Ahead.Clinical practice and epidemiology in mental health : CP & EMH · 2018
    Article
  13. Design of FRET Probes for SNP RS1006737, Related to Mood Disorder.Clinical practice and epidemiology in mental health : CP & EMH · 2018
    Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Germano OrrùO.B.L. (Oral Biotechnology Laboratory), Dipartimento di Chirurgia e Odontostomatologia Università degli Studi di Cagliari, Cagliari, Italy. orru@unica.it
Mario Francesco Marini
Maria Laura Ciusa
Daniela Isola
Marina Cotti
Marco Baldoni
Vincenzo Piras
Elisabetta Pisano
Caterina Montaldo
University of Cagliari · ITUniversity of Milano-Bicocca · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundThe aim of our study is to describe a fast molecular method, able to distinguish and quantize the two different genotypes (652 and JP2) of an important periodontal pathogen: Actinobacillus actinomycetemcomitans. The two genotypes show differences in the expression of an important pathogenic factor: the leukotoxin (ltx). In order to evidence this, we performed a real time PCR procedure on the ltx operon, able to recognize Aa clinical isolates with different leukotoxic potentials.

methodsThe specificity of the method was confirmed in subgingival plaque and saliva specimens collected from eighty-one Italian (Sardinian) subjects with a mean age of 43.9, fifty five (68 %) of whom had various clinical forms of periodontal disease.

resultsThis procedure showed a good sensitivity and a high linear dynamic range of quantization (10(7)-10(2) cells/ml) for all genotypes and a good correlation factor (R2 = 0.97-0.98). Compared with traditional cultural methods, this real time PCR procedure is more sensitive; in fact in two subgingival plaque and two positive saliva specimens Aa was only detected with the molecular method.

conclusionA low number of Sardinian patients was found positive for Aa infections in the oral cavity, (just 10 positive periodontal cases out of 81 and two of these were also saliva positive). The highly leukotoxic JP2 strain was the most representative (60 % of the positive specimens); the samples from periodontal pockets and from saliva showed some ltx genotype for the same patient. Our experience suggests that this approach is suitable for a rapid and complete laboratory diagnosis for Aa infection.

Indexed as

AdolescentAdultAgedAged, 80 and overAggregatibacter actinomycetemcomitansBenzothiazolesChildDental PlaqueDiaminesExotoxinsFemaleGenotypeHumansMaleMiddle AgedOrganic ChemicalsBenzothiazolesDiaminesExotoxinsleukotoxinOrganic ChemicalsQuinolinesSYBR Green I

Identifiers

PMID16772039
PMCPMC1539009
OpenAlexW2136201977

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.