Evidence map›Paper›PMID 16766694›Full record

ArticleThe Plant cell2006

Analysis of the Arabidopsis rsr4-1/pdx1-3 mutant reveals the critical function of the PDX1 protein family in metabolism, development, and vitamin B6 biosynthesis.

Susan Wagner, Anne Bernhardt, Jan Erik Leuendorf, Christel Drewke, Anna Lytovchenko, Nader Mujahed, Cristian Gurgui, Wolf B Frommer, Eckhard Leistner, Alisdair R Fernie and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed, 1 pooled it
4.4field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 1 synthesis or guideline pooled it, 86 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Multiple roles for Vitamin BScientific reports · 2019
    Article
  14. Article
  15. Review
  16. Review
  17. Article
  18. Plant physiology · 2017
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Susan WagnerAngewandte Genetik, Freie Universität Berlin, 14195 Berlin, Germany.
Anne Bernhardt
Jan Erik Leuendorf
Christel Drewke
Anna Lytovchenko
Nader Mujahed
Cristian Gurgui
Wolf B Frommer
Eckhard Leistner
Alisdair R Fernie
Hanjo Hellmann
Freie Universität Berlin · DEUniversity of Bonn · DEMax Planck Institute of Molecular Plant Physiology · DEDepartment of Plant Biology · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Vitamin B6 represents a highly important group of compounds ubiquitous in all living organisms. It has been demonstrated to alleviate oxidative stress and in its phosphorylated form participates as a cofactor in >100 biochemical reactions. By means of a genetic approach, we have identified a novel mutant, rsr4-1 (for reduced sugar response), with aberrant root and leaf growth that requires supplementation of vitamin B6 for normal development. Cloning of the mutated gene revealed that rsr4-1 carries a point mutation in a member of the PDX1/SOR1/SNZ (for Pyridoxine biosynthesis protein 1/Singlet oxygen resistant 1/Snooze) family that leads to reduced vitamin B6 content. Consequently, metabolism is broadly altered, mainly affecting amino acid, raffinose, and shikimate contents and trichloroacetic acid cycle constituents. Yeast two-hybrid and pull-down analyses showed that Arabidopsis thaliana PDX1 proteins can form oligomers. Interestingly, the mutant form of PDX1 has severely reduced capability to oligomerize, potentially suggesting that oligomerization is important for function. In summary, our results demonstrate the critical function of the PDX1 protein family for metabolism, whole-plant development, and vitamin B6 biosynthesis in higher plants.

Indexed as

Amino Acid SequenceArabidopsisArabidopsis ProteinsCarbon-Nitrogen LyasesChromosomes, PlantEnergy MetabolismFlowersGene Expression ProfilingGenetic Complementation TestMolecular Sequence DataNitrogenous Group TransferasesPhenotypePlant LeavesPlants, Genetically ModifiedPoint MutationProtein Structure, QuaternaryArabidopsis ProteinsAt2g38230 protein, ArabidopsisCarbon-Nitrogen LyasesNitrogenous Group TransferasesPyridoxineVitamin B 6Vitamin B Complex

Identifiers

PMID16766694
PMCPMC1488916
OpenAlexW2147807626

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.