Evidence map›Paper›PMID 16764723›Full record

ArticleRetrovirology2006

Induction of the HIV-1 Tat co-factor cyclin T1 during monocyte differentiation is required for the regulated expression of a large portion of cellular mRNAs.

Wendong Yu, Yan Wang, Chad A Shaw, Xiao-Feng Qin, Andrew P Rice

Open access · goldAbstract read
In one paragraph

Article in Retrovirology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.0field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

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  12. 55K isoform of CDK9 associates with Ku70 and is involved in DNA repair.Biochemical and biophysical research communications · 2010
    Article
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  16. Cyclin T2 is essential for mouse embryogenesis.Molecular and cellular biology · 2009
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Wendong YuDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston, Texas 77030, USA. wy132177@bcm.tmc.edu
Yan Wang
Chad A Shaw
Xiao-Feng Qin
Andrew P Rice
Baylor College of Medicine · USThe University of Texas MD Anderson Cancer Center · US

Funding

Mechanisms of HIV-1 latency in CD4+ T lymphocytesR01AI035381 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 1995 to 2007
$2.5M
REGULATION OF MRNA FOR TAK SUBUNITS IN T LYMPHOCYTESR01AI045374 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 1999 to 2008
$1.9M
Mechanism of HIV-1 Tat FunctionR56AI035381 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 2009 to 2009
$384k
Regulation of Tak/P-TEFbR21AI045374 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI RICE, ANDREW P · 2003 to 2003
$263k
NIAID NIH HHS AI35381NIAID NIH HHS AI45374NIAID NIH HHS R01 AI035381NIAID NIH HHS R01 AI045374NIAID NIH HHS R21 AI045374NIAID NIH HHS R56 AI035381
6 · The paper itself

Abstract

backgroundP-TEFb, a general RNA polymerase II elongation factor, is composed of CDK9 (cyclin-dependent kinase 9) as a catalytic unit and either cyclin T1, T2 or K as a regulatory subunit. The cyclin T1/P-TEFb complex is targeted by HIV to mediate Tat transactivation. Cyclin T1 protein expression is induced during early macrophage differentiation, suggesting a role in regulation of mRNA expression during the differentiation process. To study the functional significance of cyclin T1 induction during differentiation, we utilized the human Mono Mac 6 (MM6) monocytic cell line.

resultsWe found that cyclin T1 protein expression is induced by a post-transcriptional mechanism following PMA treatment of MM6 cells, similar to its induction in primary monocytes and macrophages. Also in agreement with findings in primary cells, cyclin T2a is present at relatively high levels in MM6 cells and is not induced by PMA. Although the knock-down of cyclin T1 in MM6 cells by shRNA inhibited HIV-1 Tat transactivation, MM6 cell growth was not affected by the depletion of cyclin T1. Using DNA microarray technology, we found that more than 20% of genes induced by PMA require cyclin T1 for their normal level of induction, and approximately 15% of genes repressed by PMA require cyclin T1 for their normal level of repression. Gene ontology analysis indicates that many of these cyclin T1-dependent genes are related to immune response and signal transduction.

conclusionThese results suggest that cyclin T1 serves a critical role in the program of macrophage differentiation, and this raises questions about the feasibility of cyclin T1 serving as an antiviral therapeutic target.

Indexed as

Genes, tatCell DifferentiationCyclinsCyclin TGene Expression RegulationHIV-1HumansMacrophagesMonocytesOligonucleotide Array Sequence AnalysisRNA, MessengerRNA Polymerase IIRNA, Small InterferingTetradecanoylphorbol AcetateTranscriptional ActivationCCNT1 protein, humanCyclinsCyclin TRNA, MessengerRNA Polymerase IIRNA, Small InterferingTetradecanoylphorbol Acetate

Identifiers

PMID16764723
PMCPMC1557533
OpenAlexW2098624389

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.