ArticleJournal of computational chemistry2006
Coronavirus phylogeny based on 2D graphical representation of DNA sequence.
Article in Journal of computational chemistry, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.
Who cites it
12 citing papers in PubMed.
- A new graph-theoretic approach to determine the similarity of genome sequences based on nucleotide triplets.Genomics · 2020Article
- A 2D graphical representation of the sequences of DNA based on triplets and its application.EURASIP journal on bioinformatics & systems biology · 2014Article
- Phylogenetic analysis of protein sequences based on distribution of length about common sub-string.The protein journal · 2011Article
- Graphical and numerical representations of DNA sequences: statistical aspects of similarity.Journal of mathematical chemistry · 2011Article
- QSAR for RNases and theoretic-experimental study of molecular diversity on peptide mass fingerprints of a new Leishmania infantum protein.Molecular diversity · 2010Article
- Computational analysis and determination of a highly conserved surface exposed segment in H5N1 avian flu and H1N1 swine flu neuraminidase.BMC structural biology · 2010Article
- Using Gaussian model to improve biological sequence comparison.Journal of computational chemistry · 2010Article
- Generalized lattice graphs for 2D-visualization of biological information.Journal of theoretical biology · 2009Article
- Article
- Alignment-free prediction of mycobacterial DNA promoters based on pseudo-folding lattice network or star-graph topological indices.Journal of theoretical biology · 2009Article
- A Poisson model of sequence comparison and its application to coronavirus phylogeny.Mathematical biosciences · 2009Article
- Natural/random protein classification models based on star network topological indices.Journal of theoretical biology · 2008Article
Corrections and comments
PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.
Authors and funding
3 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
A novel coronavirus has been identified as the cause of the outbreak of severe acute respiratory syndrome (SARS). Previous phylogenetic analyses based on sequence alignments show that SARS-CoVs form a new group distantly related to the other three groups of previously characterized coronaviruses. In this aritcle, a new approach based on the 2D graphical representation of the whole genome sequence is proposed to analyze the phylogenetic relationships of coronaviruses. The evolutionary distances are obtained through measuring the differences among the two-dimensional curves.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.