Evidence map›Paper›PMID 16751663›Full record

ArticleGenetics2006

The F-box protein Dia2 overcomes replication impedance to promote genome stability in Saccharomyces cerevisiae.

Deborah Blake, Brian Luke, Pamela Kanellis, Paul Jorgensen, Theo Goh, Sonya Penfold, Bobby-Joe Breitkreutz, Daniel Durocher, Matthias Peter, Mike Tyers

Open access · bronzeAbstract read
In one paragraph

Article in Genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 43 papers.

0numbers the graph read from it
0cells of the map it votes in
43citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

43 citing papers in PubMed, 63 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Role and Regulation of Pif1 Family Helicases at the Replication Fork.International journal of molecular sciences · 2022
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Mechanisms of eukaryotic replisome disassembly.Biochemical Society transactions · 2020
    Review
  11. Article
  12. Article
  13. Mechanisms of DNA replication termination.Nature reviews. Molecular cell biology · 2017
    Review
  14. Article
  15. Article
  16. CRL2Genes & development · 2017
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 3 institutions in 2 countries.

Deborah BlakeDepartment of Medical Genetics and Microbiology, University of Toronto, Ontario, Canada.
Brian Luke
Pamela Kanellis
Paul Jorgensen
Theo Goh
Sonya Penfold
Bobby-Joe Breitkreutz
Daniel Durocher
Matthias Peter
Mike Tyers
Lunenfeld-Tanenbaum Research Institute · CAUniversity of Toronto · CAUniversity of Zurich · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The maintenance of DNA replication fork stability under conditions of DNA damage and at natural replication pause sites is essential for genome stability. Here, we describe a novel role for the F-box protein Dia2 in promoting genome stability in the budding yeast Saccharomyces cerevisiae. Like most other F-box proteins, Dia2 forms a Skp1-Cdc53/Cullin-F-box (SCF) E3 ubiquitin-ligase complex. Systematic analysis of genetic interactions between dia2Delta and approximately 4400 viable gene deletion mutants revealed synthetic lethal/synthetic sick interactions with a broad spectrum of DNA replication, recombination, checkpoint, and chromatin-remodeling pathways. dia2Delta strains exhibit constitutive activation of the checkpoint kinase Rad53 and elevated counts of endogenous DNA repair foci and are unable to overcome MMS-induced replicative stress. Notably, dia2Delta strains display a high rate of gross chromosomal rearrangements (GCRs) that involve the rDNA locus and an increase in extrachromosomal rDNA circle (ERC) formation, consistent with an observed enrichment of Dia2 in the nucleolus. These results suggest that Dia2 is essential for stable passage of replication forks through regions of damaged DNA and natural fragile regions, particularly the replication fork barrier (RFB) of rDNA repeat loci. We propose that the SCFDia2 ubiquitin ligase serves to modify or degrade protein substrates that would otherwise impede the replication fork in problematic regions of the genome.

Indexed as

DNA ReplicationGenomic InstabilityCell CycleChromosome SegregationChromosomes, FungalDNA DamageDNA, FungalDNA RepairF-Box ProteinsFungal ProteinsOligonucleotide Array Sequence AnalysisProtein Interaction MappingSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsSKP Cullin F-Box Protein LigasesDia2 protein, S cerevisiaeDNA, FungalF-Box ProteinsFungal ProteinsSaccharomyces cerevisiae ProteinsSKP Cullin F-Box Protein Ligases

Identifiers

PMID16751663
PMCPMC1698614
OpenAlexW2155246734

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.