Evidence map›Paper›PMID 16751556›Full record

ArticleApplied and environmental microbiology2006

Shifting the pH profile of Aspergillus niger PhyA phytase to match the stomach pH enhances its effectiveness as an animal feed additive.

Taewan Kim, Edward J Mullaney, Jesus M Porres, Karl R Roneker, Sarah Crowe, Sarah Rice, Taegu Ko, Abul H J Ullah, Catherine B Daly, Ross Welch and 1 more

Open access · greenAbstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 113 citations in OpenAlex.

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  6. Cloning, expression, and characterization of a porcine pancreatic α-amylase inAnimal nutrition (Zhongguo xu mu shou yi xue hui) · 2018
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  14. Redesigning protein pKa values.Protein science : a publication of the Protein Society · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 1 country.

Taewan KimDepartment of Animal Science, Cornell University, Ithaca, NY 14853, USA.
Edward J Mullaney
Jesus M Porres
Karl R Roneker
Sarah Crowe
Sarah Rice
Taegu Ko
Abul H J Ullah
Catherine B Daly
Ross Welch
Xin Gen Lei
Cornell University · USUnited States Department of Agriculture · USIthaca College · USSouthern Regional Research Center · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Environmental pollution by phosphorus from animal waste is a major problem in agriculture because simple-stomached animals, such as swine, poultry, and fish, cannot digest phosphorus (as phytate) present in plant feeds. To alleviate this problem, a phytase from Aspergillus niger PhyA is widely used as a feed additive to hydrolyze phytate-phosphorus. However, it has the lowest relative activity at the pH of the stomach (3.5), where the hydrolysis occurs. Our objective was to shift the pH optima of PhyA to match the stomach condition by substituting amino acids in the substrate-binding site with different charges and polarities. Based on the crystal structure of PhyA, we prepared 21 single or multiple mutants at Q50, K91, K94, E228, D262, K300, and K301 and expressed them in Pichia pastoris yeast. The wild-type (WT) PhyA showed the unique bihump, two-pH-optima profile, whereas 17 mutants lost one pH optimum or shifted the pH optimum from pH 5.5 to the more acidic side. The mutant E228K exhibited the best overall changes, with a shift of pH optimum to 3.8 and 266% greater (P < 0.05) hydrolysis of soy phytate at pH 3.5 than the WT enzyme. The improved efficacy of the enzyme was confirmed in an animal feed trial and was characterized by biochemical analysis of the purified mutant enzymes. In conclusion, it is feasible to improve the function of PhyA phytase under stomach pH conditions by rational protein engineering.

Indexed as

Animal FeedFood AdditivesHydrogen-Ion Concentration6-PhytaseAmino Acid SubstitutionAspergillus nigerBinding SitesEnvironmental PollutionFungal ProteinsKineticsModels, MolecularMutagenesis, Site-DirectedProtein ConformationRecombinant Proteins6-PhytaseFood AdditivesFungal ProteinsRecombinant Proteins

Identifiers

PMID16751556
PMCPMC1489644
OpenAlexW2062623006

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.