Evidence map›Paper›PMID 16751532›Full record

ArticleApplied and environmental microbiology2006

A virulence and antimicrobial resistance DNA microarray detects a high frequency of virulence genes in Escherichia coli isolates from Great Lakes recreational waters.

Katia Hamelin, Guillaume Bruant, Abdel El-Shaarawi, Stephen Hill, Thomas A Edge, Sadjia Bekal, John Morris Fairbrother, Josée Harel, Christine Maynard, Luke Masson and 1 more

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed.

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  7. Genetic Characterization of Antimicrobial-ResistantInternational journal of environmental research and public health · 2019
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Katia HamelinBiotechnology Research Institute, National Research Council of Canada, 6100 Royalmount Ave., Montréal, Québec, Canada H4P 2R2.
Guillaume Bruant
Abdel El-Shaarawi
Stephen Hill
Thomas A Edge
Sadjia Bekal
John Morris Fairbrother
Josée Harel
Christine Maynard
Luke Masson
Roland Brousseau

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Escherichia coli is generally described as a commensal species with occasional pathogenic strains. Due to technological limitations, there is currently little information concerning the prevalence of pathogenic E. coli strains in the environment. For the first time, using a DNA microarray capable of detecting all currently described virulence genes and commonly found antimicrobial resistance genes, a survey of environmental E. coli isolates from recreational waters was carried out. A high proportion (29%) of 308 isolates from a beach site in the Great Lakes carried a pathotype set of virulence-related genes, and 14% carried antimicrobial resistance genes, findings consistent with a potential risk for public health. The results also showed that another 8% of the isolates had unusual virulence gene combinations that would be missed by conventional screening. This new application of a DNA microarray to environmental waters will likely have an important impact on public health, epidemiology, and microbial ecology in the future.

Indexed as

Drug Resistance, BacterialAnti-Bacterial AgentsDNA, BacterialEscherichia coliFresh WaterMicrobial Sensitivity TestsOligonucleotide Array Sequence AnalysisRecreationSeasonsUnited StatesVirulenceWater MicrobiologyAnti-Bacterial AgentsDNA, Bacterial

Identifiers

PMID16751532
PMCPMC1489589

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.