Evidence map›Paper›PMID 16751526›Full record

ArticleApplied and environmental microbiology2006

Comparative and functional analysis of sortase-dependent proteins in the predicted secretome of Lactobacillus salivarius UCC118.

Jan-Peter van Pijkeren, Carlos Canchaya, Kieran A Ryan, Yin Li, Marcus J Claesson, Barbara Sheil, Lothar Steidler, Liam O'Mahony, Gerald F Fitzgerald, Douwe van Sinderen and 1 more

Open access · greenAbstract readComparative Study
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 67 papers.

0numbers the graph read from it
0cells of the map it votes in
67citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

67 citing papers in PubMed, 138 citations in OpenAlex.

  1. Review
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  8. In Silico Safety Assessment ofInternational journal of molecular sciences · 2024
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  11. Review
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  14. Review
  15. Role of SrtA in Pathogenicity ofMicroorganisms · 2020
    Article
  16. Review
  17. Role of Sortase A inFrontiers in microbiology · 2019
    Article
  18. Article
  19. Article
  20. Comparative Genomics ofFrontiers in microbiology · 2018
    Article

7 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

Jan-Peter van PijkerenDepartment of Microbiology, University College Cork, Cork, Ireland.
Carlos Canchaya
Kieran A Ryan
Yin Li
Marcus J Claesson
Barbara Sheil
Lothar Steidler
Liam O'Mahony
Gerald F Fitzgerald
Douwe van Sinderen
Paul W O'Toole
University College Cork · IE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Surface proteins are important factors in the interaction of probiotic and pathogenic bacteria with their environment or host. We performed a comparative bioinformatic analysis of four publicly available Lactobacillus genomes and the genome of Lactobacillus salivarius subsp. salivarius strain UCC118 to identify secreted proteins and those linked to the cell wall. Proteins were identified which were predicted to be anchored by WXL-binding domains, N- or C-terminal anchors, GW repeats, lipoprotein anchors, or LysM-binding domains. We identified 10 sortase-dependent surface proteins in L. salivarius UCC118, including three which are homologous to mucus-binding proteins (LSL_0152, LSL_0311, and LSL_1335), a collagen-binding protein homologue (LSL_2020b), two hypothetical proteins (LSL_1838 and LSL_1902b), an enterococcal surface protein homologue (LSL_1085), a salivary agglutinin-binding homologue (LSL_1832b), an epithelial binding protein homologue (LSL_1319), and a proteinase homologue (LSL_1774b). However, two of the genes are gene fragments and four are pseudogenes, suggesting a lack of selection for their function. Two of the 10 genes were not transcribed in vitro, and 1 gene showed a 10-fold increase in transcript level in stationary phase compared to logarithmic phase. The sortase gene was deleted, and three genes encoding sortase-dependent proteins were disrupted. The sortase mutant and one sortase-dependent protein (mucus-binding homologue) mutant showed a significant reduction in adherence to human epithelial cell lines. The genome-wide investigation of surface proteins can thus help our understanding of their roles in host interaction.

Indexed as

AminoacyltransferasesBacterial ProteinsCell LineChromosome MappingChromosomes, BacterialCysteine EndopeptidasesDNA PrimersEpithelial CellsHumansKineticsLactobacillusMembrane ProteinsPlasmidsPolymerase Chain ReactionAminoacyltransferasesBacterial ProteinsCysteine EndopeptidasesDNA PrimersMembrane Proteinssortase A

Identifiers

PMID16751526
PMCPMC1489637
OpenAlexW2125968754

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.