Evidence map›Paper›PMID 16751265›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2006

Tyrosyl-DNA phosphodiesterase (Tdp1) participates in the repair of Top2-mediated DNA damage.

Karin C Nitiss, Mobeen Malik, Xiaoping He, Stephen W White, John L Nitiss

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 92 papers.

0numbers the graph read from it
0cells of the map it votes in
92citing papers in PubMed
5.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

92 citing papers in PubMed, 157 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Genome Instability Induced by Topoisomerase Misfunction.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Review
  12. Article
  13. SUMO: A Swiss Army Knife for Eukaryotic Topoisomerases.Frontiers in molecular biosciences · 2022
    Review
  14. Review
  15. Article
  16. Article
  17. Trapped topoisomerase II initiates formation of de novo duplications via the nonhomologous end-joining pathway in yeast.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  18. The Roles of SPOP in DNA Damage Response and DNA Replication.International journal of molecular sciences · 2020
    Review
  19. Review
  20. Article

32 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Karin C NitissDepartment of Molecular Pharmacology, St. Jude Children's Research Hospital, Memphis, TN 38105, USA.
Mobeen Malik
Xiaoping He
Stephen W White
John L Nitiss
St. Jude Children's Research Hospital · US

Funding

Viral Vector Technology (VVTSR)P30CA021765 · NCI · ST. JUDE CHILDREN'S RESEARCH HOSPITAL · PI CHARLES ROBERTS · 1985 to 2026
$166.9M
ANTITOPOISOMERASE DRUG ACTION IN YEASTR01CA052814 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NITISS, JOHN L · 1990 to 2014
$2.7M
DNA REPAIR AND ANTITOPOISOMERASE DRUG EFFECTSR01CA082313 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI NITISS, JOHN L · 1999 to 2010
$2.3M
NCI NIH HHS CA21765NCI NIH HHS CA52814NCI NIH HHS CA82313NCI NIH HHS P30 CA021765NCI NIH HHS R01 CA052814NCI NIH HHS R01 CA082313
6 · The paper itself

Abstract

Agents targeting topoisomerases are active against a wide range of human tumors. Stabilization of covalent complexes, converting topoisomerases into DNA-damaging agents, is an essential aspect of cell killing by these drugs. A unique aspect of the repair of topoisomerase-mediated DNA damage is the requirement for pathways that can remove protein covalently bound to DNA. Tyrosyl-DNA phosphodiesterase (Tdp1) is an enzyme that removes phosphotyrosyl moieties bound to the 3' end of DNA. Cells lacking Tdp1 are hypersensitive to camptothecin, consistent with a role for Tdp1 in processing 3' phosphotyrosyl protein-DNA covalent complexes. Because Top2p forms a 5' phosphotyrosyl linkage with DNA, previous work predicted that Tdp1p would not be active against lesions involving Top2p. We found that deletion of the TDP1 gene in yeast confers hypersensitivity to Top2 targeting agents. Combining tdp1 mutations with deletions of genes involved in nonhomologous end joining, excision repair, or postreplication repair enhanced sensitivity to Top2 targeting drugs over the level seen with single mutants, suggesting that Tdp1 may function in collaboration with multiple pathways involved in strand break repair. tdp1 mutations can sensitize yeast cells to drugs targeting Top2 even when TOP1 is deleted. Finally, bacterially expressed yeast Tdp1p is able to remove a peptide derived from yTop2 that is covalently bound to DNA by a 5' phosphotyrosyl linkage. Our results show that Tdp1 plays more general roles in DNA repair than repair of Top1 mediated DNA damage, and may participate in repairing many types of base damage to DNA.

Indexed as

DNA DamageDNA RepairAntigens, NeoplasmDNA-Binding ProteinsDNA, FungalDNA Repair EnzymesDNA Topoisomerases, Type IDNA Topoisomerases, Type IIEndodeoxyribonucleasesEndonucleasesEtoposideHumansMutationNucleic Acid Synthesis InhibitorsPhosphoric Diester HydrolasesPoly-ADP-Ribose Binding ProteinsAntigens, NeoplasmDNA-Binding ProteinsDNA, FungalDNA Repair EnzymesDNA Topoisomerases, Type IDNA Topoisomerases, Type IIEndodeoxyribonucleasesEndonucleasesEtoposideNucleic Acid Synthesis InhibitorsPhosphoric Diester HydrolasesPoly-ADP-Ribose Binding ProteinsRAD1 protein, S cerevisiaeRAD2 protein, S cerevisiaeSaccharomyces cerevisiae ProteinsTdp1 protein, S cerevisiaeTOP2A protein, human

Identifiers

PMID16751265
PMCPMC1482547
OpenAlexW2007047273

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.