Evidence map›Paper›PMID 16741231›Full record

ArticleRNA (New York, N.Y.)2006

Use of targetrons to disrupt essential and nonessential genes in Staphylococcus aureus reveals temperature sensitivity of Ll.LtrB group II intron splicing.

Jun Yao, Jin Zhong, Yuan Fang, Edward Geisinger, Richard P Novick, Alan M Lambowitz

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 61 papers.

0numbers the graph read from it
0cells of the map it votes in
61citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

61 citing papers in PubMed, 100 citations in OpenAlex.

  1. Article
  2. Article
  3. StaphylococcalInternational journal of molecular sciences · 2022
    Article
  4. Biomedicines · 2021
    Article
  5. Article
  6. Article
  7. Article
  8. A mouse model ofJournal of medical microbiology · 2020
    Article
  9. Review
  10. Review
  11. Article
  12. Review
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article

1 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Jun YaoInstitute for Cellular and Molecular Biology, Department of Chemistry and Biochemistry, The University of Texas at Austin, TX 78712, USA.
Jin Zhong
Yuan Fang
Edward Geisinger
Richard P Novick
Alan M Lambowitz
NewYork–Presbyterian Hospital · USThe University of Texas at Austin · US

Funding

RETROPLASMID AND GROUP II INTRON REVERSE TRANSCRIPTASESR01GM037949 · NIGMS · UNIVERSITY OF TEXAS AUSTIN · PI LAMBOWITZ, ALAN M. · 1986 to 2019
$8.6M
MOLECULAR GENETICS OF EXOTOXIN REGULATION IN S. AUREUSR01AI030138 · NIAID · PUBLIC HEALTH RESEARCH INSTITUTE · PI NOVICK, RICHARD P. · 1991 to 2011
$3.5M
MOLECULAR GENETICS OF EXOTOXIN REGULATION IN S. AUREUSR21AI030138 · NIAID · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI NOVICK, RICHARD P. · 2000 to 2000
$393k
NIAID NIH HHS AI30138NIAID NIH HHS R01 AI030138NIAID NIH HHS R21 AI030138NIGMS NIH HHS GM37949NIGMS NIH HHS R01 GM037949
6 · The paper itself

Abstract

We show that a targetron based on the Lactococcus lactis Ll.LtrB group II intron can be used for efficient chromosomal gene disruption in the human pathogen Staphylococcus aureus. Targetrons expressed from derivatives of vector pCN37, which uses a cadmium-inducible promoter, or pCN39, a derivative of pCN37 with a temperature-sensitive replicon, gave site-specific disruptants of the hsa and seb genes in 37%-100% of plated colonies without selection. To disrupt hsa, an essential gene, we used a group II intron that integrates in the sense orientation relative to target gene transcription and thus could be removed by RNA splicing, enabling the production of functional HSa protein. We show that because splicing of the Ll.LtrB intron by the intron-encoded protein is temperature-sensitive, this method yields a conditional hsa disruptant that grows at 32 degrees C but not 43 degrees C. The temperature sensitivity of the splicing reaction suggests a general means of obtaining one-step conditional disruptions in any organism. In nature, temperature sensitivity of group II intron splicing could limit the temperature range of an organism containing a group II intron inserted in an essential gene.

Indexed as

Genes, BacterialIntronsBase SequenceDNA, BacterialEscherichia coliGenes, EssentialHumansMutagenesis, InsertionalOperonReverse Transcriptase Polymerase Chain ReactionRNA, BacterialRNA SplicingStaphylococcus aureusThermodynamicsDNA, BacterialRNA, Bacterial

Identifiers

PMID16741231
PMCPMC1484445
OpenAlexW2097294790

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.