Evidence map›Paper›PMID 16740930›Full record

ArticleJournal of bacteriology2006

Molecular mechanism of tryptophan-dependent transcriptional regulation in Chlamydia trachomatis.

Johnny C Akers, Ming Tan

Open access · bronzeAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 49 papers.

0numbers the graph read from it
0cells of the map it votes in
49citing papers in PubMed
1.1field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

49 citing papers in PubMed, 73 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Molecular pathogenesis ofFrontiers in cellular and infection microbiology · 2023
    Review
  5. Article
  6. The role of tryptophan inFrontiers in cellular and infection microbiology · 2022
    Review
  7. Article
  8. Article
  9. Article
  10. Review
  11. Article
  12. The Repressor Function of theJournal of bacteriology · 2020
    Article
  13. Article
  14. Ammonia generation by tryptophan synthase drives a key genetic difference between genital and ocularProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  15. HowProceedings of the National Academy of Sciences of the United States of America · 2019
    Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Characterization of theInfection and immunity · 2018
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Johnny C AkersDepartment of Microbiology and Molecular Genetics, University of California, Irvine, CA 92697-4025, USA.
Ming Tan
University of California, Irvine · US

Funding

Biomedical Informatics Training ProgramT15LM007443 · NLM · UNIVERSITY OF CALIFORNIA-IRVINE · PI BALDI, PIERRE · 2002 to 2012
$9.3M
The Regulation of gene expression in ChlamydiaR01AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 1999 to 2021
$7.1M
Molecular mechanisms of gene regulation in ChlamydiaK02AI057563 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2004 to 2008
$474k
Mechanisms of temporal gene regulation in ChlamydiaR56AI044198 · NIAID · UNIVERSITY OF CALIFORNIA-IRVINE · PI TAN, MING · 2010 to 2010
$383k
NIAID NIH HHS AI 05763NIAID NIH HHS AI44198NIAID NIH HHS K02 AI057563NIAID NIH HHS R01 AI044198NIAID NIH HHS R56 AI044198NLM NIH HHS LM007443NLM NIH HHS T15 LM007443
6 · The paper itself

Abstract

Tryptophan is an essential amino acid that is required for normal development in Chlamydia species, and tryptophan metabolism has been implicated in chlamydial persistence and tissue tropism. The ability to synthesize tryptophan is not universal among the Chlamydiaceae, but species that have a predicted tryptophan biosynthetic pathway also encode an ortholog of TrpR, a regulator of tryptophan metabolism in many gram-negative bacteria. We show that in Chlamydia trachomatis serovar D, TrpR regulates its own gene and trpB and trpA, the genes for the two subunits of tryptophan synthase. These three genes form an operon that is transcribed by the major form of chlamydial RNA polymerase. TrpR acts as a tryptophan-dependent aporepressor that binds specifically to operator sequences upstream of the trpRBA operon. We also found that TrpR repressed in vitro transcription of trpRBA in a promoter-specific manner, and the level of repression was dependent upon the concentrations of TrpR and tryptophan. Our findings provide a mechanism for chlamydiae to sense changes in tryptophan levels and to respond by modulating expression of the tryptophan biosynthesis genes, and we present a unified model that shows how C. trachomatis can combine transcriptional repression and attenuation to regulate intrachlamydial tryptophan levels. In the face of host defense mechanisms that limit tryptophan availability from the infected cell, the ability to maintain homeostatic control of intrachlamydial tryptophan levels is likely to play an important role in chlamydial pathogenesis.

Indexed as

Gene Expression Regulation, BacterialBacterial ProteinsBase SequenceChlamydia trachomatisDNA-Directed RNA PolymerasesDown-RegulationEscherichia coli ProteinsGenes, BacterialGenes, RegulatorMolecular Sequence DataOperonPromoter Regions, GeneticRepressor ProteinsTranscription, GeneticTryptophanTryptophan SynthaseBacterial ProteinsDNA-Directed RNA PolymerasesEscherichia coli ProteinsRepressor ProteinsTRPR protein, E coliTryptophanTryptophan Synthase

Identifiers

PMID16740930
PMCPMC1482941
OpenAlexW2171167914

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.