Evidence map›Paper›PMID 16740910›Full record

ArticleJournal of medical genetics2006

Genetic evidence for the role of loci at 19q13 in cleft lip and palate.

A Warrington, A R Vieira, K Christensen, I M Orioli, E E Castilla, P A Romitti, J C Murray

Abstract readLetter
In one paragraph

Article in Journal of medical genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed.

  1. Article
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Genetics of nonsyndromic orofacial clefts.The Cleft palate-craniofacial journal : official publication of the American Cleft Palate-Craniofacial Association · 2012
    Review
  8. Article
  9. Article
  10. Candidate gene/loci studies in cleft lip/palate and dental anomalies finds novel susceptibility genes for clefts.Genetics in medicine : official journal of the American College of Medical Genetics · 2008
    Article
  11. A genome wide linkage scan for cleft lip and palate and dental anomalies.American journal of medical genetics. Part A · 2008
    Article
  12. Article
  13. Current concepts in genetics of nonsyndromic clefts.Indian journal of plastic surgery : official publication of the Association of Plastic Surgeons of India
    Article
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

A Warrington
A R Vieira
K Christensen
I M Orioli
E E Castilla
P A Romitti
J C Murray

Funding

PHENOTYPE AND GENETICS IN OROFACIAL CLEFT FAMILIESP50DE016215 · NIDCR · UNIVERSITY OF IOWA · PI FITZPATRICK, DAVID · 2004 to 2008
$10.1M
Molecular Genetic Epidemiology of Cleft Lip and PalateR37DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2004 to 2013
$6.8M
GENE-ENVIRONMENT INTERACTION IN FACIAL CLEFTSR01DE011948 · NIDCR · UNIVERSITY OF SOUTHERN DENMARK · PI CHRISTENSEN, KAARE · 1998 to 2006
$1.8M
MOLECULAR GENETIC EPIDEMIOLOGY OF CLEFT LIP AND PALATER01DE008559 · NIDCR · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 1988 to 2003
$1.5M
International Maternal &Child Health Research/TrainingD43TW005503 · FIC · UNIVERSITY OF IOWA · PI MURRAY, JEFFREY C · 2001 to 2005
$915k
FIC NIH HHS 5 D43 TW05503FIC NIH HHS D43 TW005503NIDCR NIH HHS DE 08559NIDCR NIH HHS P50 DE016215NIDCR NIH HHS R01 DE008559NIDCR NIH HHS R01 DE011948NIDCR NIH HHS R01 DE 11948NIDCR NIH HHS R37 DE008559
6 · The paper itself

Abstract

backgroundClefts of the lip and palate are common birth defects, affecting approximately 1 in 700 births worldwide. The aetiology of clefting is complex, with multiple genetic and environmental influences.

methodsGenotype based linkage disequilibrium analysis was conducted using the family based association test (FBAT) and the likelihood ratio test (LRT). We also carried out direct sequencing of the PVR and PVRL2 candidate genes based on their homology to PVRL1, a gene shown previously to cause Margarita Island clefting. Participants included 434 patients with cleft lip with or without cleft palate or cleft palate only and their mothers from eight countries in South America, 205 nuclear triads (father-mother-affected child) from Iowa, 541 nuclear triads from Denmark, and 100 patients with cleft lip and palate from the Philippines.

resultsAn allelic variant in the PVR gene showed statistically significant association with both South American and Iowa populations (p = 0.0007 and p = 0.0009, respectively). Direct sequencing of PVR and PVRL2 yielded 26 variants, including two rare amino acid changes, one in each gene, which were not seen in controls.

conclusionsWe found an association between a common variant in a gene at 19q and isolated clefting in two heterogeneous populations. However, it is unclear from our data if rare variants in PVR and PVRL2 are sufficient to cause clefting in isolation.

Indexed as

Chromosomes, Human, Pair 19AllelesAmino Acid SequenceCell Adhesion MoleculesChromosome MappingCleft LipCleft PalateDNA Mutational AnalysisFemaleGene FrequencyGenetic VariationHumansIowaLinkage DisequilibriumMaleMembrane GlycoproteinsCell Adhesion MoleculesMembrane GlycoproteinsMembrane ProteinsNECTIN1 protein, humanNectinspoliovirus receptorReceptors, Virus

Identifiers

PMID16740910
PMCPMC2564544

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.