Evidence map›Paper›PMID 16738934›Full record

ArticleImmunogenetics2006

Ancient divergence of a complex family of immune-type receptor genes.

John P Cannon, Robert N Haire, M Gail Mueller, Ronda T Litman, Donna D Eason, Deborah Tinnemore, Chris T Amemiya, Tatsuya Ota, Gary W Litman

Abstract read
In one paragraph

Article in Immunogenetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.7field-weighted citation impact, top 15% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. Article
  11. Article
  12. Article
  13. Article
  14. Evolutionary constraint on Otx2 neuroectoderm enhancers-deep conservation from skate to mouse and unique divergence in teleost.Proceedings of the National Academy of Sciences of the United States of America · 2006
    Article
  15. FcgammaRII and multi-system autoimmune disease.Springer seminars in immunopathology · 2006
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 6 institutions in 2 countries.

John P CannonDepartment of Pediatrics, University of South Florida College of Medicine, and USF/ACH Children's Research Institute, 830 First Street South, St. Petersburg, FL, 33701, USA.
Robert N Haire
M Gail Mueller
Ronda T Litman
Donna D Eason
Deborah Tinnemore
Chris T Amemiya
Tatsuya Ota
Gary W Litman
Moffitt Cancer Center · USBenaroya Research InstituteJohns Hopkins University · USThe Graduate University for Advanced Studies, SOKENDAI · JPUniversity of South Florida · USUniversity of South Florida St. Petersburg · US

Funding

EVOLUTIONARY ORIGINS OF IMMUNE-TYPE GENESR01AI023338 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI LITMAN, GARY WILLIAM · 1985 to 2014
$3.6M
NIAID NIH HHS R01 AI023338
6 · The paper itself

Abstract

Multigene families of activating/inhibitory receptors belonging to the immunoglobulin superfamily (IgSF) regulate immunological and other cell-cell interactions. A new family of such genes, termed modular domain immune-type receptors (MDIRs), has been identified in the clearnose skate (Raja eglanteria), a phylogenetically ancient vertebrate. At least five different major forms of predicted MDIR proteins are comprised of four different subfamilies of IgSF ectodomains of the intermediate (I)- or C2-set. The predicted number of individual IgSF ectodomains in MDIRs varies from one to six. MDIR1 contains a positively charged transmembrane residue and MDIR2 and MDIR3 each possesses at least one immunoreceptor tyrosine-based inhibitory motif in their cytoplasmic regions. MDIR4 and MDIR5 lack characteristic activating/inhibitory signalling motifs. MDIRs are encoded in a particularly large and complex multigene family. MDIR domains exhibit distant sequence similarity to mammalian CMRF-35-like molecules, polymeric immunoglobulin receptors, triggering receptors expressed on myeloid cells (TREMs), TREM-like transcripts, NKp44 and FcR homologs, as well as to sequences identified in several different vertebrate genomes. Phylogenetic analyses suggest that MDIRs are representative members of an extended family of IgSF genes that diverged before or very early in evolution of the vertebrates and subsequently came to occupy multiple, fully independent distributions in the present day.

Indexed as

Amino Acid SequenceAnimalsEvolution, MolecularGenetic VariationImmunoglobulinsMolecular Sequence DataMultigene FamilyPhylogenyProtein Structure, TertiaryReceptors, ImmunologicSkates, FishImmunoglobulinsReceptors, Immunologic

Identifiers

PMID16738934
PMCPMC3701310
OpenAlexW2081942474

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.