Evidence map›Paper›PMID 16737528›Full record

ArticleBMC microbiology2006

Genetic diversity of Clostridium perfringens type A isolates from animals, food poisoning outbreaks and sludge.

Anders Johansson, Anna Aspan, Elisabeth Bagge, Viveca Båverud, Björn E Engström, Karl-Erik Johansson

Open access · goldAbstract read
In one paragraph

Article in BMC microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 83 citations in OpenAlex.

  1. Article
  2. Article
  3. AnMicroorganisms · 2025
    Article
  4. Article
  5. Article
  6. Article
  7. Infection Dynamics ofFrontiers in veterinary science · 2022
    Article
  8. Animals : an open access journal from MDPI · 2020
    Review
  9. Characterization ofInternational journal of environmental research and public health · 2020
    Article
  10. Article
  11. Article
  12. Article
  13. Large-Scale Genomic Analyses and Toxinotyping ofFrontiers in microbiology · 2019
    Article
  14. Pulsed-field gel electrophoresis of enterotoxicInternational journal of veterinary science and medicine · 2018
    Article
  15. Article
  16. Review
  17. Complete genome sequence ofGut pathogens · 2017
    Article
  18. Article
  19. Article
  20. Pork implicated in a Shiga toxin-producing Escherichia coli O157:H7 outbreak in Ontario, Canada.Canadian journal of public health = Revue canadienne de sante publique · 2012
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 1 country.

Anders JohanssonNational Veterinary Institute, SE-751 89 Uppsala, Sweden. anders.johansson@sva.se
Anna Aspan
Elisabeth Bagge
Viveca Båverud
Björn E Engström
Karl-Erik Johansson
Swedish Veterinary Agency · SESwedish University of Agricultural Sciences · SE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundClostridium perfringens, a serious pathogen, causes enteric diseases in domestic animals and food poisoning in humans. The epidemiological relationship between C. perfringens isolates from the same source has previously been investigated chiefly by pulsed-field gel electrophoresis (PFGE). In this study the genetic diversity of C. perfringens isolated from various animals, from food poisoning outbreaks and from sludge was investigated.

resultsWe used PFGE to examine the genetic diversity of 95 C. perfringens type A isolates from eight different sources. The isolates were also examined for the presence of the beta2 toxin gene (cpb2) and the enterotoxin gene (cpe). The cpb2 gene from the 28 cpb2-positive isolates was also partially sequenced (519 bp, corresponding to positions 188 to 706 in the consensus cpb2 sequence). The results of PFGE revealed a wide genetic diversity among the C. perfringens type A isolates. The genetic relatedness of the isolates ranged from 58 to 100% and 56 distinct PFGE types were identified. Almost all clusters with similar patterns comprised isolates with a known epidemiological correlation. Most of the isolates from pig, horse and sheep carried the cpb2 gene. All isolates originating from food poisoning outbreaks carried the cpe gene and three of these also carried cpb2. Two evolutionary different populations were identified by sequence analysis of the partially sequenced cpb2 genes from our study and cpb2 sequences previously deposited in GenBank.

conclusionAs revealed by PFGE, there was a wide genetic diversity among C. perfringens isolates from different sources. Epidemiologically related isolates showed a high genetic similarity, as expected, while isolates with no obvious epidemiological relationship expressed a lesser degree of genetic similarity. The wide diversity revealed by PFGE was not reflected in the 16S rRNA sequences, which had a considerable degree of sequence similarity. Sequence comparison of the partially sequenced cpb2 gene revealed two genetically different populations. This is to our knowledge the first study in which the genetic diversity of C. perfringens isolates both from different animals species, from food poisoning outbreaks and from sludge has been investigated.

Indexed as

Genetic VariationAnimalsAnimals, DomesticBacterial ToxinsBase SequenceClostridium InfectionsClostridium perfringensDisease OutbreaksDNA, BacterialDNA, RibosomalElectrophoresis, Gel, Pulsed-FieldEnterotoxinsFoodborne DiseasesHumansMolecular Sequence DataRNA, Ribosomal, 16SBacterial Toxinscpb2 protein, Clostridium perfringensDNA, BacterialDNA, Ribosomalenterotoxin, ClostridiumEnterotoxinsRNA, Ribosomal, 16SSewage

Identifiers

PMID16737528
PMCPMC1513381
OpenAlexW2138601249

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.