Evidence map›Paper›PMID 16735580›Full record

ArticleThe Journal of cell biology2006

Asi1 is an inner nuclear membrane protein that restricts promoter access of two latent transcription factors.

Mirta Boban, Arezou Zargari, Claes Andréasson, Stijn Heessen, Johan Thyberg, Per O Ljungdahl

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of cell biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 47 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 2 countries.

Mirta BobanLudwig Institute for Cancer Research, S-171 77 Stockholm, Sweden.
Arezou Zargari
Claes Andréasson
Stijn Heessen
Johan Thyberg
Per O Ljungdahl
Ludwig Cancer Research · SEKarolinska Institutet · SELudwig Cancer Research · BE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Stp1 and Stp2 are homologous transcription factors in yeast that are synthesized as latent cytoplasmic precursors with NH2-terminal regulatory domains. In response to extracellular amino acids, the plasma membrane-localized Ssy1-Ptr3-Ssy5 (SPS) sensor endoproteolytically processes Stp1 and Stp2, an event that releases the regulatory domains. The processed forms of Stp1 and Stp2 efficiently target to the nucleus and bind promoters of amino acid permease genes. In this study, we report that Asi1 is an integral component of the inner nuclear membrane that maintains the latent characteristics of unprocessed Stp1 and Stp2. In cells lacking Asi1, full-length forms of Stp1 and Stp2 constitutively induce SPS sensor-regulated genes. The regulatory domains of Stp1 and Stp2 contain a conserved motif that confers Asi1-mediated control when fused to an unrelated DNA-binding protein. Our results indicate that latent precursor forms of Stp1 and Stp2 inefficiently enter the nucleus; however, once there, Asi1 restricts them from binding SPS sensor-regulated promoters. These findings reveal an unanticipated role of inner nuclear membrane proteins in controlling gene expression.

Indexed as

Amino Acid SequenceCarrier ProteinsDNA-Binding ProteinsGene Expression Regulation, FungalIntracellular Signaling Peptides and ProteinsMembrane ProteinsMolecular Sequence DataMultiprotein ComplexesMutationNuclear EnvelopeNuclear ProteinsPromoter Regions, GeneticRNA-Binding ProteinsSaccharomyces cerevisiaeSaccharomyces cerevisiae ProteinsTranscription FactorsASI1 protein, S cerevisiaeCarrier ProteinsDNA-Binding ProteinsIntracellular Signaling Peptides and ProteinsMembrane ProteinsMultiprotein ComplexesNuclear ProteinsPTR3 protein, S cerevisiaeRNA-Binding ProteinsSaccharomyces cerevisiae ProteinsSSY1 protein, S cerevisiaeSTP1 protein, S cerevisiaeStp2 protein, S cerevisiaeTranscription Factors

Identifiers

PMID16735580
PMCPMC2063887
OpenAlexW2034223317

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.