Evidence map›Paper›PMID 16734668›Full record

ArticleTraffic (Copenhagen, Denmark)2006

Delineation and modelling of a nucleolar retention signal in the coronavirus nucleocapsid protein.

Mark L Reed, Brian K Dove, Richard M Jackson, Rebecca Collins, Gavin Brooks, Julian A Hiscox

Open access · bronzeAbstract read
In one paragraph

Article in Traffic (Copenhagen, Denmark), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
9.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 55 citations in OpenAlex.

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  12. Review
  13. Viruses and the nucleolus: the fatal attraction.Biochimica et biophysica acta · 2014
    Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Mark L ReedInstitute of Molecular and Cellular Biology, University of Leeds, Leeds, UK.
Brian K Dove
Richard M Jackson
Rebecca Collins
Gavin Brooks
Julian A Hiscox
University of Leeds · GBInstitute of Structural and Molecular Biology · GBUniversity of Reading · GB

Funding

Biotechnology and Biological Sciences Research Council BBS/B/03416Wellcome Trust
6 · The paper itself

Abstract

Unlike nuclear localization signals, there is no obvious consensus sequence for the targeting of proteins to the nucleolus. The nucleolus is a dynamic subnuclear structure which is crucial to the normal operation of the eukaryotic cell. Studying nucleolar trafficking signals is problematic as many nucleolar retention signals (NoRSs) are part of classical nuclear localization signals (NLSs). In addition, there is no known consensus signal with which to inform a study. The avian infectious bronchitis virus (IBV), coronavirus nucleocapsid (N) protein, localizes to the cytoplasm and the nucleolus. Mutagenesis was used to delineate a novel eight amino acid motif that was necessary and sufficient for nucleolar retention of N protein and colocalize with nucleolin and fibrillarin. Additionally, a classical nuclear export signal (NES) functioned to direct N protein to the cytoplasm. Comparison of the coronavirus NoRSs with known cellular and other viral NoRSs revealed that these motifs have conserved arginine residues. Molecular modelling, using the solution structure of severe acute respiratory (SARS) coronavirus N-protein, revealed that this motif is available for interaction with cellular factors which may mediate nucleolar localization. We hypothesise that the N-protein uses these signals to traffic to and from the nucleolus and the cytoplasm.

Indexed as

Active Transport, Cell NucleusAnimalsCell NucleolusChlorocebus aethiopsComputational BiologyConserved SequenceCoronavirus Nucleocapsid ProteinsInfectious bronchitis virusLeucineModels, MolecularMolecular Sequence DataNuclear Localization SignalsNucleocapsid ProteinsProtein Structure, TertiaryRecombinant ProteinsSequence AlignmentCoronavirus Nucleocapsid ProteinsLeucineNuclear Localization SignalsNucleocapsid ProteinsRecombinant Proteins

Identifiers

PMID16734668
PMCPMC7488588
OpenAlexW1891511011

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.