Evidence map›Paper›PMID 16732332›Full record

ArticleOncogene2006

LHX6 is a sensitive methylation marker in head and neck carcinomas.

M R H Estécio, E M Youssef, P Rahal, E E Fukuyama, J F Góis-Filho, J V Maniglia, E M Goloni-Bertollo, J-P J Issa, E H Tajara

Abstract read
PubMed Publisher
In one paragraph

Article in Oncogene, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
1.2field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed, 53 citations in OpenAlex.

  1. Article
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  4. Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
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  12. Lhx6 and Lhx8: cell fate regulators and beyond.FASEB journal : official publication of the Federation of American Societies for Experimental Biology · 2015
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

M R H EstécioDepartment of Leukemia, UT MD Anderson Cancer Center, Houston, TX, USA.
E M Youssef
P Rahal
E E Fukuyama
J F Góis-Filho
J V Maniglia
E M Goloni-Bertollo
J-P J Issa
E H Tajara
Faculdade de Medicina de São José do Rio Preto · BRThe University of Texas MD Anderson Cancer Center · USGenesis Foundation · USUniversidade Estadual Paulista (Unesp) · BR

Funding

Neoplasia and Methylated CpG Islands AmplificationR33CA089837 · NCI · UNIVERSITY OF TEXAS MD ANDERSON CAN CTR · PI ISSA, JEAN-PIERRE J · 2002 to 2004
$747k
NCI NIH HHS R33CA89837
6 · The paper itself

Abstract

Head and neck cancer remains a morbid and often fatal disease and at the present time few effective molecular markers have been identified. The purpose of the present work was to identify new molecular markers for head and neck squamous cell carcinoma (HNSCC). We applied methylation-sensitive arbitrarily primed PCR (MS/AP-PCR) to isolate sequences differentially methylated in HNSCC. The most frequently hypermethylated fragment we found maps close to a cytosine guanine dinucleotide (CpG) island on chromosome 9q33.2, and hypermethylation of this CpG island was associated with transcriptional silencing of an alternative transcript of the LHX6 gene. Using combined bisulfite restriction analysis (COBRA), hypermethylation of this fragment was detected in 13 of 14 (92.8%) HNSCC cell lines studied and 21 of 32 (65.6%) primary tumors, whereas little or no methylation was seen in 10 normal oral mucosa samples. We extended this investigation to other cancer cell lines and methylation was found in those derived from colon, breast, leukemia and lung, and methylation was also found in 12/14 primary colon tumors. These findings suggest that differentially methylated (DIME)-6 hypermethylation is a good cancer marker in HNSCC as well as in other kinds of neoplasias and confirm the importance of searching for markers of epigenetic dysregulation in cancer.

Indexed as

DNA MethylationBase SequenceBiomarkers, TumorCarcinoma, Squamous CellCell Line, TumorChromosomes, Human, Pair 9DNA, NeoplasmDNA PrimersHead and Neck NeoplasmsHomeodomain ProteinsHumansLIM-Homeodomain ProteinsNerve Tissue ProteinsReverse Transcriptase Polymerase Chain ReactionTranscription FactorsBiomarkers, TumorDNA, NeoplasmDNA PrimersHomeodomain ProteinsLHX6 protein, humanLIM-Homeodomain ProteinsNerve Tissue ProteinsTranscription Factors

Identifiers

PMID16732332
OpenAlexW2091138462

What OpenQuestion holds

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Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.