ArticleJournal of virology2006
Comparing phylogenetic codivergence between polyomaviruses and their hosts.
Article in Journal of virology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 34 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
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Who cites it
34 citing papers in PubMed, 78 citations in OpenAlex.
- Polyomavirus-associated Disseminated T-cell Lymphoma in a Colony of Zebra Finches (Comparative medicine · 2023Article
- First molecular detection of avian polyomavirus from captive psittacine birds in Bangladesh, together with confirmation of beak and feather disease virus co-infection.Virusdisease · 2023Article
- Molecular analysis Polish isolates of goose hemorrhagic polyomavirus from geese and free-living birds.Heliyon · 2023Article
- A polyomavirus detected in American black bear (Ursus americanus).Archives of virology · 2021Article
- Extensive Genetic Diversity of Polyomaviruses in Sympatric Bat Communities: Host Switching versus Coevolution.Journal of virology · 2020Article
- Human polyomavirus KI, WU, BK, and JC in healthy volunteers.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2019Article
- High-Throughput Characterization of Viral and Cellular Protein Expression Patterns During JC Polyomavirus Infection.Frontiers in microbiology · 2019Article
- Cryptic diversity in Tranzscheliella spp. (Ustilaginales) is driven by host switches.Scientific reports · 2017Article
- Comparative analysis estimates the relative frequencies of co-divergence and cross-species transmission within viral families.PLoS pathogens · 2017Article
- Concurrence of Iridovirus, Polyomavirus, and a Unique Member of a New Group of Fish Papillomaviruses in Lymphocystis Disease-Affected Gilthead Sea Bream.Journal of virology · 2016Article
- Assessing Host-Virus Codivergence for Close Relatives of Merkel Cell Polyomavirus Infecting African Great Apes.Journal of virology · 2016Article
- The Ancient Evolutionary History of Polyomaviruses.PLoS pathogens · 2016Article
- Complete Genome Sequence of Bovine Polyomavirus Type 1 from Aborted Cattle, Isolated in Belgium in 2014.Genome announcements · 2016Article
- Genomic characterization of two novel polyomaviruses in Brazilian insectivorous bats.Archives of virology · 2015Article
- Discovery of a polyomavirus in European badgers (Meles meles) and the evolution of host range in the family Polyomaviridae.The Journal of general virology · 2015Article
- Cophylogenetic interactions between marine viruses and eukaryotic picophytoplankton.BMC evolutionary biology · 2014Article
- Role of genomic and proteomic tools in the study of host-virus interactions and virus evolution.Indian journal of virology : an official organ of Indian Virological Society · 2013Article
- Discovery of diverse polyomaviruses in bats and the evolutionary history of the Polyomaviridae.The Journal of general virology · 2013Article
- A cornucopia of human polyomaviruses.Nature reviews. Microbiology · 2013Review
- Discovery of STL polyomavirus, a polyomavirus of ancestral recombinant origin that encodes a unique T antigen by alternative splicing.Virology · 2013Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 1 country.
Funding
Abstract
Seventy-two full genomes corresponding to nine mammalian (67 strains) and two avian (5 strains) polyomavirus species were analyzed using maximum likelihood and Bayesian methods of phylogenetic inference. Our fully resolved and well-supported (bootstrap proportions > 90%; posterior probabilities = 1.0) trees separate the bird polyomaviruses (avian polyomavirus and goose hemorrhagic polyomavirus) from the mammalian polyomaviruses, which supports the idea of spitting the genus into two subgenera. Such a split is also consistent with the different viral life strategies of each group. Simian (simian virus 40, simian agent 12 [Sa12], and lymphotropic polyomavirus) and rodent (hamster polyomavirus, mouse polyomavirus, and murine pneumotropic polyomavirus [MPtV]) polyomaviruses did not form monophyletic groups. Using our best hypothesis of polyomavirus evolutionary relationships and established host phylogenies, we performed a cophylogenetic reconciliation analysis of codivergence. Our analyses generated six optimal cophylogenetic scenarios of coevolution, including 12 codivergence events (P < 0.01), suggesting that Polyomaviridae coevolved with their avian and mammal hosts. As individual lineages, our analyses showed evidence of host switching in four terminal branches leading to MPtV, bovine polyomavirus, Sa12, and BK virus, suggesting a combination of vertical and horizontal transfer in the evolutionary history of the polyomaviruses.
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Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.