Evidence map›Paper›PMID 16724112›Full record

ArticleThe EMBO journal2006

Two conformations of a crystalline human tRNA synthetase-tRNA complex: implications for protein synthesis.

Xiang-Lei Yang, Francella J Otero, Karla L Ewalt, Jianming Liu, Manal A Swairjo, Caroline Köhrer, Uttam L RajBhandary, Robert J Skene, Duncan E McRee, Paul Schimmel

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
2.2field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 60 citations in OpenAlex.

  1. Article
  2. Architecture ofProceedings of the National Academy of Sciences of the United States of America · 2025
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  18. Emergence and evolution.Topics in current chemistry · 2014
    Review
  19. An overview of biological macromolecule crystallization.International journal of molecular sciences · 2013
    Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Xiang-Lei YangDepartment of Molecular Biology, The Scripps Research Institute, La Jolla, CA 92037, USA. xlyang@scripps.edu
Francella J Otero
Karla L Ewalt
Jianming Liu
Manal A Swairjo
Caroline Köhrer
Uttam L RajBhandary
Robert J Skene
Duncan E McRee
Paul Schimmel
Scripps Research Institute · USMassachusetts Institute of Technology · US

Funding

INVESTIGATIONS OF REACTIONS OF PHYSIOLOGICAL IMPORTANCER01GM015539 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI SCHIMMEL, PAUL R · 1985 to 2011
$6.6M
STRUCTURE/FUNCTION OF TRANSFER RIBONUCLEIC ACIDSR37GM017151 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI RAJBHANDARY, UTTAM L · 1997 to 2006
$3.6M
REACTIONS OF PHYSIOLOGICAL IMPORTANCER37GM015539 · NIGMS · SCRIPPS RESEARCH INSTITUTE · PI SCHIMMEL, PAUL R · 1989 to 1998
–
NIGMS NIH HHS GM 15539NIGMS NIH HHS R01 GM015539NIGMS NIH HHS R37 GM017151NIGMS NIH HHS R37-GM17151
6 · The paper itself

Abstract

Aminoacylation of tRNA is the first step of protein synthesis. Here, we report the co-crystal structure of human tryptophanyl-tRNA synthetase and tRNATrp. This enzyme is reported to interact directly with elongation factor 1alpha, which carries charged tRNA to the ribosome. Crystals were generated from a 50/50% mixture of charged and uncharged tRNATrp. These crystals captured two conformations of the complex, which are nearly identical with respect to the protein and a bound tryptophan. They are distinguished by the way tRNA is bound. In one, uncharged tRNA is bound across the dimer, with anticodon and acceptor stem interacting with separate subunits. In this cross-dimer tRNA complex, the class I enzyme has a class II-like tRNA binding mode. This structure accounts for biochemical investigations of human TrpRS, including species-specific charging. In the other conformation, presumptive aminoacylated tRNA is bound only by the anticodon, the acceptor stem being free and having space to interact precisely with EF-1alpha, suggesting that the product of aminoacylation can be directly handed off to EF-1alpha for the next step of protein synthesis.

Indexed as

Nucleic Acid ConformationProtein BiosynthesisAmino Acid SequenceAnticodonCrystallizationCrystallography, X-RayHumansModels, MolecularMolecular Sequence DataPeptide Elongation Factor 1Protein BindingProtein ConformationRNA, Transfer, TrpSequence AlignmentTryptophanTryptophan-tRNA LigaseAnticodonPeptide Elongation Factor 1RNA, Transfer, TrpTryptophanTryptophan-tRNA Ligase

Identifiers

PMID16724112
PMCPMC1500858
OpenAlexW2030825462

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.