Evidence map›Paper›PMID 16721604›Full record

ArticleHuman genetics2006

ITGB3 shows genetic and expression interaction with SLC6A4.

Lauren A Weiss, Carole Ober, Edwin H Cook

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
1.4field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 44 citations in OpenAlex.

  1. Review
  2. p38α MAPK signaling drives pharmacologically reversible brain and gastrointestinal phenotypes in the SERT Ala56 mouse.Proceedings of the National Academy of Sciences of the United States of America · 2018
    Article
  3. Article
  4. The Gain-of-Function Integrin β3 Pro33 Variant Alters the Serotonin System in the Mouse Brain.The Journal of neuroscience : the official journal of the Society for Neuroscience · 2017
    Article
  5. Article
  6. Integrins in synapse regulation.Nature reviews. Neuroscience · 2016
    Review
  7. Review
  8. Integrin β3 Haploinsufficiency Modulates Serotonin Transport and Antidepressant-Sensitive Behavior in Mice.Neuropsychopharmacology : official publication of the American College of Neuropsychopharmacology · 2015
    Article
  9. Review
  10. Genetic effects on cerebellar structure across mouse models of autism using a magnetic resonance imaging atlas.Autism research : official journal of the International Society for Autism Research · 2014
    Article
  11. Article
  12. Article
  13. Article
  14. Absence of preference for social novelty and increased grooming in integrin β3 knockout mice: initial studies and future directions.Autism research : official journal of the International Society for Autism Research · 2011
    Article
  15. Article
  16. Association and gene-gene interaction of SLC6A4 and ITGB3 in autism.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2010
    Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Lauren A WeissDepartment of Human Genetics, The University of Chicago, Chicago, IL 60637, USA. laweiss@chgr.mgh.harvard.edu
Carole Ober
Edwin H Cook
University of Chicago · USMassachusetts General Hospital · US

Funding

ZOLEDRONATE &OSTEOPOROTIC EFFECTS OF ANDROGEN DEPRIVATIM01RR000055 · NCRR · UNIVERSITY OF CHICAGO · PI DE WIT, HARRIET · 1985 to 2007
$19.0M
NEUROIMAGING STUDIES OF AUTISM SPECTRUM CONDITIONSU19HD035482 · NICHD · YALE UNIVERSITY · PI VOLKMAR, FRED ROBERT · 2002 to 2006
$6.7M
Positional Cloning of a 6p-linked Asthma GeneR01HL072414 · NHLBI · UNIVERSITY OF CHICAGO · PI OBER, CAROLE · 2003 to 2007
$3.0M
NCRR NIH HHS M01 RR00055NHLBI NIH HHS R01 HL72414NICHD NIH HHS U19 HD35482
6 · The paper itself

Abstract

Autism affects more males than females and is associated with disturbances of the serotonin system. The integrin beta3 (ITGB3) and serotonin transporter (SLC6A4) genes were both recently identified as male quantitative trait loci (QTLs) for serotonin levels and alleles of each have been associated with autism. Here, we use publicly available genomic resources to determine whether regulation of expression level could be the mechanism behind association between serotonin level and noncoding variation in ITGB3. We also examine whether ITGB3 might interact with SLC6A4 to contribute to autism susceptibility. Using murine and human expression data, we observe that ITGB3 and SLC6A4 expression levels are correlated (0.38<r<0.78). Moreover, genetic variation in ITGB3 is associated with expression of both ITGB3 (P=0.012) and SLC6A4 (P=0.008) in unrelated CEPH individuals. We also show preliminary evidence that genotypes at the ITGB3 and SLC6A4 loci may interact to affect autism susceptibility (P=0.033).

Indexed as

Gene Expression RegulationAnimalsAutistic DisorderFemaleGenetic LinkageGenetic Predisposition to DiseaseGenotypeHumansIntegrin beta3MaleMiceMice, Inbred C57BLMice, Inbred DBAPolymorphism, Single NucleotideQuantitative Trait LociRNA, MessengerIntegrin beta3ITGB3 protein, humanRNA, MessengerSerotonin Plasma Membrane Transport ProteinsSLC6A4 protein, humanSlc6a4 protein, mouse

Identifiers

PMID16721604
OpenAlexW1968298980

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.