Evidence map›Paper›PMID 16715176›Full record

ArticlePLoS genetics2006

Origination of an X-linked testes chimeric gene by illegitimate recombination in Drosophila.

J Roman Arguello, Ying Chen, Shuang Yang, Wen Wang, Manyuan Long

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
8.7field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 67 citations in OpenAlex.

  1. Article
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  4. Article
  5. Searching for signatures of sexually antagonistic selection on stickleback sex chromosomes.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2022
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  9. Review
  10. Frequent nonallelic gene conversion on the human lineage and its effect on the divergence of gene duplicates.Proceedings of the National Academy of Sciences of the United States of America · 2017
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. New gene evolution: little did we know.Annual review of genetics · 2013
    Review
  16. Article
  17. Novel genes from formation to function.International journal of evolutionary biology · 2012
    Article
  18. Article
  19. Phylogenetic relationship of a new class of LMW-GS genes in the M genome of Aegilops comosa.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

J Roman ArguelloCommittee on Evolutionary Biology, University of Chicago, Chicago, Illinois, USA.
Ying Chen
Shuang Yang
Wen Wang
Manyuan Long
University of Chicago · USChinese Academy of Sciences · CNKunming Institute of Zoology · CN

Funding

Variation of D. melanogaster chromosome 4R01GM065429 · NIGMS · UNIVERSITY OF CHICAGO · PI LONG, MANYUAN NO · 2003 to 2006
$1.1M
NIGMS NIH HHS R01 GM065429NIGMS NIH HHS R01GM065429
6 · The paper itself

Abstract

The formation of chimeric gene structures provides important routes by which novel proteins and functions are introduced into genomes. Signatures of these events have been identified in organisms from wide phylogenic distributions. However, the ability to characterize the early phases of these evolutionary processes has been difficult due to the ancient age of the genes or to the limitations of strictly computational approaches. While examples involving retrotransposition exist, our understanding of chimeric genes originating via illegitimate recombination is limited to speculations based on ancient genes or transfection experiments. Here we report a case of a young chimeric gene that has originated by illegitimate recombination in Drosophila. This gene was created within the last 2-3 million years, prior to the speciation of Drosophila simulans, Drosophila sechellia, and Drosophila mauritiana. The duplication, which involved the Bällchen gene on Chromosome 3R, was partial, removing substantial 3' coding sequence. Subsequent to the duplication onto the X chromosome, intergenic sequence was recruited into the protein-coding region creating a chimeric peptide with approximately 33 new amino acid residues. In addition, a novel intron-containing 5' UTR and novel 3' UTR evolved. We further found that this new X-linked gene has evolved testes-specific expression. Following speciation of the D. simulans complex, this novel gene evolved lineage-specifically with evidence for positive selection acting along the D. simulans branch.

Indexed as

Genes, X-LinkedRecombination, Genetic3' Untranslated RegionsAnimalsDrosophilaEvolution, MolecularGenetic LinkageMaleMutant Chimeric ProteinsPhylogenyRetroelementsTestisX Chromosome3' Untranslated RegionsMutant Chimeric ProteinsRetroelements

Identifiers

PMID16715176
PMCPMC1463047
OpenAlexW2001463236

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.