Evidence map›Paper›PMID 16714279›Full record

ArticleRNA (New York, N.Y.)2006

Conserved zinc fingers mediate multiple functions of ZFP100, a U7snRNP associated protein.

Eric J Wagner, Jason K Ospina, Yue Hu, Miroslav Dundr, A Gregory Matera, William F Marzluff

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.8field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 1 country.

Eric J WagnerDepartment of Biochemistry and Biophysics, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA.
Jason K Ospina
Yue Hu
Miroslav Dundr
A Gregory Matera
William F Marzluff
University of North Carolina at Chapel Hill · USCase Western Reserve University · USRosalind Franklin University of Medicine and Science · US

Funding

Integrated Training in Cancer Model SystemsT32CA009156 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DER, CHANNING J. · 1985 to 2020
$19.7M
CONTROL OF HISTONE MRNA SYNTHESISR01GM029832 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI DOMINSKI, ZBIGNIEW, MARZLUFF, WILLIAM F. · 1985 to 2022
$9.0M
ORGANIZATION OF RIBONUCLEOPROTEINS IN MAMMALIAN CELLSR01GM053034 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MATERA, A. GREGORY · 1996 to 2015
$4.3M
Molecular Etiology of Spinal Muscular AtrophyR01NS041617 · NINDS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI MATERA, A. GREGORY · 2001 to 2013
$3.6M
TRAINING IN GENETICST32GM008613 · NIGMS · CASE WESTERN RESERVE UNIVERSITY · PI SALZ, HELEN KAREN · 1996 to 2010
$3.1M
Elucidation of the Histone 3' End Formation MechanismF32GM070101 · NIGMS · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WAGNER, ERIC J · 2004 to 2006
$142k
NCI NIH HHS T32 CA009156NCI NIH HHS T32-CA09156NIGMS NIH HHS F32 GM070101NIGMS NIH HHS F32 GM070101-02NIGMS NIH HHS R01 GM029832NIGMS NIH HHS R01 GM053034NIGMS NIH HHS R01 GM 29832NIGMS NIH HHS R01 GM 53034NIGMS NIH HHS T32 GM008613NIGMS NIH HHS T32 GM08613NINDS NIH HHS R01 NS041617NINDS NIH HHS R01 NS41617
6 · The paper itself

Abstract

Formation of the 3' end of replication-dependent histone mRNAs is most robust during S phase and is mediated by both the stem-loop binding protein (SLBP) and the U7 snRNP. We previously identified a 100-kDa zinc finger protein (ZFP100) as a component of U7 snRNP that interacts with the SLBP/pre-mRNA complex. Here, we show that myc- or GFP-tagged ZFP100 overexpressed after transfection is concentrated in Cajal bodies (CBs), and unlike components of the spliceosomal snRNPs, photobleaching experiments demonstrate that ZFP100 is stably associated with CBs. Of the 18 zinc fingers contained within ZFP100, the region encompassing fingers 2-6 is sufficient to maintain CB localization. Zn fingers 5-10 are required for maximal binding of ZFP100 to a 20-amino-acid region of Lsm11, a U7 snRNP core protein. Expression of ZFP100 stimulates histone mRNA processing in vivo, assayed by activation of a reporter gene that encodes a GFP mRNA ending in a histone 3' end. Importantly, the domain that is required for CB localization and Lsm11 binding is also sufficient to stimulate histone pre-mRNA processing in vivo. Comparisons with other mammalian ZFP100 orthologs show that the central Zn fingers sufficient for in vivo activity are most highly conserved, whereas the number and sequence of the Zn fingers in the N- and C-terminal domains vary.

Indexed as

Zinc FingersAmino Acid SequenceBase SequenceBinding SitesCoiled BodiesConserved SequenceDNA-Binding ProteinsFlow CytometryGene DeletionHeLa CellsHistonesHumansMolecular Sequence DataPlasmidsRibonucleoprotein, U7 Small NuclearDNA-Binding ProteinsHistonesRibonucleoprotein, U7 Small NuclearZNF473 protein, human

Identifiers

PMID16714279
PMCPMC1484431
OpenAlexW2111751246

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.