Evidence map›Paper›PMID 16710701›Full record

ReviewPflugers Archiv : European journal of physiology2007

Intracellular peptide transporters in human--compartmentalization of the "peptidome".

Meike Herget, Robert Tampé

Open access · bronzeAbstract readReview
PubMed Publisher
In one paragraph

Review in Pflugers Archiv : European journal of physiology, 2007. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
1.5field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 68 citations in OpenAlex.

  1. Review
  2. Article
  3. Interdomain communication in a homodimeric ABC transporter.The Journal of biological chemistry · 2024
    Article
  4. Article
  5. Article
  6. Article
  7. Moving the Cellular Peptidome by Transporters.Frontiers in cell and developmental biology · 2018
    Review
  8. Mitochondrial cAMP signaling.Cellular and molecular life sciences : CMLS · 2016
    Review
  9. Alternative haplotypes of antigen processing genes in zebrafish diverged early in vertebrate evolution.Proceedings of the National Academy of Sciences of the United States of America · 2016
    Article
  10. Article
  11. Article
  12. Article
  13. An iterative searching and ranking algorithm for prioritising pharmacogenomics genes.International journal of computational biology and drug design · 2013
    Article
  14. ATP-binding cassette (ABC) transporter expression and localization in sea urchin development.Developmental dynamics : an official publication of the American Association of Anatomists · 2012
    Article
  15. Article
  16. Article
  17. Article
  18. Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Meike HergetInstitute of Biochemistry, Biocenter, Goethe-University Frankfurt, Frankfurt, Germany.
Robert Tampé
Goethe University Frankfurt · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the human genome, the five adenosine triphosphate (ATP)-binding cassette (ABC) half transporters ABCB2 (TAP1), ABCB3 (TAP2), ABCB9 (TAP-like), and in part, also ABCB8 and ABCB10 are closely related with regard to their structural and functional properties. Although targeted to different cellular compartments such as the endoplasmic reticulum (ER), lysosomes, and mitochondria, they are involved in intracellular peptide trafficking across membranes. The transporter associated with antigen processing (TAP1 and TAP2) constitute a key machinery in the major histocompatibility complex (MHC) class I-mediated cellular immune defense against infected or malignantly transformed cells. TAP translocates the cellular "peptidome" derived primarily from cytosolic proteasomal degradation into the ER lumen for presentation by MHC class I molecules. The homodimeric ABCB9 (TAP-like) complex located in lysosomal compartments shares structural and functional similarities to TAP; however, its biological role seems to be different from the MHC I antigen processing. ABCB8 and ABCB10 are targeted to the inner mitochondrial membrane. MDL1, the yeast homologue of ABCB10, is involved in the export of peptides derived from proteolysis of inner-membrane proteins into the intermembrane space. As such peptides are presented as minor histocompatibility antigens on the surface of mammalian cells, a physiological role of ABCB10 in the antigen processing can be accounted.

Indexed as

ATP-Binding Cassette TransportersAntigen PresentationATP Binding Cassette Transporter 1ATP Binding Cassette Transporter, Subfamily B, Member 2ATP Binding Cassette Transporter, Subfamily B, Member 3HumansImmediate-Early ProteinsLysosomesModels, BiologicalPhylogenyProtein Structure, TertiaryProtein TransportRNA-Binding ProteinsSubstrate SpecificityViral ProteinsABCB10 protein, humanABCB9 protein, humanATP Binding Cassette Transporter 1ATP-Binding Cassette TransportersATP Binding Cassette Transporter, Subfamily B, Member 2ATP Binding Cassette Transporter, Subfamily B, Member 3ICP47 protein, Herpes simplex virusImmediate-Early ProteinsRNA-Binding ProteinsTAP1 protein, humanTAP2 protein, humanUS6 protein, Human cytomegalovirusViral Proteins

Identifiers

PMID16710701
OpenAlexW2050122052

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.