Evidence map›Paper›PMID 16710476›Full record

ArticleThe Journal of clinical investigation2006

Met-regulated expression signature defines a subset of human hepatocellular carcinomas with poor prognosis and aggressive phenotype.

Pal Kaposi-Novak, Ju-Seog Lee, Luis Gòmez-Quiroz, Cédric Coulouarn, Valentina M Factor, Snorri S Thorgeirsson

Registry-linked trialOpen access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. It is linked to trial NCT06535737 (A Phase 2, Single Arm Study of Cabozantinib in Patients With Hepatocellular Carcinoma Who Have Received Prior Atezolizumab and Bevacizumab), which is not on this map. Cited by 195 papers, 3 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
195citing papers in PubMed, 3 pooled it
8.7field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

NCT06535737 phase2not yet recruitingnot on this mapstarted 2024, after this paper: background citation

A Phase 2, Single Arm Study of Cabozantinib in Patients With Hepatocellular Carcinoma Who Have Received Prior Atezolizumab and Bevacizumab

TypeinterventionalSponsorChulalongkorn UniversityRan2024 to 2026Enrolled40ConditionsHepatocellular Carcinoma Non-resectableArmsCabozantinib
3 · Its place in the literature

Who cites it

195 citing papers in PubMed, 3 syntheses or guidelines pooled it, 390 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Trial
  5. Plasma biomarkers as predictors of outcome in patients with advanced hepatocellular carcinoma.Clinical cancer research : an official journal of the American Association for Cancer Research · 2012
    Trial
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Review
  14. Development of mutated β-catenin gene signature to identifyJHEP reports : innovation in hepatology · 2024
    Article
  15. Review
  16. New and Old Key Players in Liver Cancer.International journal of molecular sciences · 2023
    Review
  17. Review
  18. Article
  19. Article
  20. Article

135 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Pal Kaposi-NovakLaboratory of Experimental Carcinogenesis, Center for Cancer Research, National Cancer Institute, NIH, Bethesda, Maryland 20892, USA.
Ju-Seog Lee
Luis Gòmez-Quiroz
Cédric Coulouarn
Valentina M Factor
Snorri S Thorgeirsson
National Cancer Institute · US

Funding

Molecular Classification of Human and Mouse Hepatocellular Carcinoma by Gene ExpZ01SC010385 · SC · DIVISION OF CLINICAL SCIENCES - NCI · PI THORGEIRSSON, SNORRI S · 2001 to 2008
$1.9M
The role of c-met in liver biologyZIABC010638 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI THORGEIRSSON, SNORRI · 2009 to 2013
$1.0M
The role of c-met in liver biologyZ01BC010638 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI THORGEIRSSON, SNORRI S · 2004 to 2008
$590k
Intramural NIH HHS
6 · The paper itself

Abstract

Identification of specific gene expression signatures characteristic of oncogenic pathways is an important step toward molecular classification of human malignancies. Aberrant activation of the Met signaling pathway is frequently associated with tumor progression and metastasis. In this study, we defined the Met-dependent gene expression signature using global gene expression profiling of WT and Met-deficient primary mouse hepatocytes. Newly identified transcriptional targets of the Met pathway included genes involved in the regulation of oxidative stress responses as well as cell motility, cytoskeletal organization, and angiogenesis. To assess the importance of a Met-regulated gene expression signature, a comparative functional genomic approach was applied to 242 human hepatocellular carcinomas (HCCs) and 7 metastatic liver lesions. Cluster analysis revealed that a subset of human HCCs and all liver metastases shared the Met-induced expression signature. Furthermore, the presence of the Met signature showed significant correlation with increased vascular invasion rate and microvessel density as well as with decreased mean survival time of HCC patients. We conclude that the genetically defined gene expression signatures in combination with comparative functional genomics constitute an attractive paradigm for defining both the function of oncogenic pathways and the clinically relevant subgroups of human cancers.

Indexed as

Gene Expression Regulation, NeoplasticAnimalsCarcinoma, HepatocellularCells, CulturedFemaleGene Expression ProfilingHepatocyte Growth FactorHepatocytesHumansLiver NeoplasmsMaleMiceMice, KnockoutMiddle AgedMolecular Sequence DataNeoplasm MetastasisHepatocyte Growth FactorHGF protein, humanMET protein, humanProto-Oncogene ProteinsProto-Oncogene Proteins c-metReceptors, Growth Factor

Identifiers

PMID16710476
PMCPMC1462944
OpenAlexW2042571415

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.