ArticleMolecular genetics and genomics : MGG2006
Gene-associated single nucleotide polymorphism discovery in perennial ryegrass (Lolium perenne L.).
Article in Molecular genetics and genomics : MGG, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.
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Who cites it
37 citing papers in PubMed, 85 citations in OpenAlex.
- Quick and efficient approach to develop genomic resources in orphan species: Application in Lavandula angustifolia.PloS one · 2020Article
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- Targeted genotyping-by-sequencing permits cost-effective identification and discrimination of pasture grass species and cultivars.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2016Article
- Selection Signatures in Four Lignin Genes from Switchgrass Populations Divergently Selected for In Vitro Dry Matter Digestibility.PloS one · 2016Article
- A High-Density Genetic Linkage Map for Cucumber (Cucumis sativus L.): Based on Specific Length Amplified Fragment (SLAF) Sequencing and QTL Analysis of Fruit Traits in Cucumber.Frontiers in plant science · 2016Article
- An SNP-based saturated genetic map and QTL analysis of fruit-related traits in cucumber using specific-length amplified fragment (SLAF) sequencing.BMC genomics · 2014Article
- Construction of a high-density genetic map for sesame based on large scale marker development by specific length amplified fragment (SLAF) sequencing.BMC plant biology · 2013Article
- Pathotype-specific QTL for stem rust resistance in Lolium perenne.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2013Article
- A candidate gene based approach validates Md-PG1 as the main responsible for a QTL impacting fruit texture in apple (Malus x domestica Borkh).BMC plant biology · 2013Article
- Comparative genomics to bridge Vicia faba with model and closely-related legume species: stability of QTLs for flowering and yield-related traits.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2012Article
- Generation, functional analysis and utility of Citrus grandis EST from a flower-derived cDNA library.Molecular biology reports · 2012Article
- Genome-wide SNP identification in multiple morphotypes of allohexaploid tall fescue (Festuca arundinacea Schreb).BMC genomics · 2012Article
- A transcriptome map of perennial ryegrass (Lolium perenne L.).BMC genomics · 2012Article
- Integration of gene-based markers in a pearl millet genetic map for identification of candidate genes underlying drought tolerance quantitative trait loci.BMC plant biology · 2012Article
- Association study between the gibberellic acid insensitive gene and leaf length in a Lolium perenne L. synthetic variety.BMC plant biology · 2011Article
- Comparison of a high-density genetic linkage map to genome features in the model grass Brachypodium distachyon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Identification of QTLs for morphological traits influencing waterlogging tolerance in perennial ryegrass (Lolium perenne L.).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2011Article
- Evolutionary history of tall fescue morphotypes inferred from molecular phylogenetics of the Lolium-Festuca species complex.BMC evolutionary biology · 2010Article
- EST-derived SSR markers used as anchor loci for the construction of a consensus linkage map in ryegrass (Lolium spp.).BMC plant biology · 2010Article
Corrections and comments
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Authors and funding
11 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Molecular genetic marker development in perennial ryegrass has largely been dependent on anonymous sequence variation. The availability of a large-scale EST resource permits the development of functionally-associated genetic markers based on SNP variation in candidate genes. Genic SNP loci and associated haplotypes are suitable for implementation in molecular breeding of outbreeding forage species. Strategies for in vitro SNP discovery through amplicon cloning and sequencing have been designed and implemented. Putative SNPs were identified within and between the parents of the F(1)(NA(6) x AU(6)) genetic mapping family and were validated among progeny individuals. Proof-of-concept for the process was obtained using the drought tolerance-associated LpASRa2 gene. SNP haplotype structures were determined and correlated with predicted amino acid changes. Gene-length LD was evaluated across diverse germplasm collections. A survey of SNP variation across 100 candidate genes revealed a high frequency of SNP incidence (c. 1 per 54 bp), with similar proportions in exons and introns. A proportion (c. 50%) of the validated genic SNPs were assigned to the F(1)(NA(6) x AU(6)) genetic map, showing high levels of coincidence with previously mapped RFLP loci. The perennial ryegrass SNP resource will enable genetic map integration, detailed LD studies and selection of superior allele content during varietal development.
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.