Evidence map›Paper›PMID 16707572›Full record

ArticleMolecular biology of the cell2006

Three-dimensional culture regulates Raf-1 expression to modulate fibronectin matrix assembly.

B S Winters, B K Mohan Raj, E E Robinson, R A Foty, S A Corbett

Open access · greenAbstract read
In one paragraph

Article in Molecular biology of the cell, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
0.9field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 29 citations in OpenAlex.

  1. Article
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  3. Review
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  7. Study on the potential of RGD- and PHSRN-modified alginates as artificial extracellular matrices for engineering bone.Journal of artificial organs : the official journal of the Japanese Society for Artificial Organs · 2013
    Article
  8. Article
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  10. Lung self-assembly is modulated by tissue surface tensions.American journal of respiratory cell and molecular biology · 2011
    Article
  11. Measurement of aggregate cohesion by tissue surface tensiometry.Journal of visualized experiments : JoVE · 2011
    Article
  12. Article
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  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

B S WintersDepartment of Surgery, Robert Wood Johnson Medical School, New Brunswick, NJ 08903, USA.
B K Mohan Raj
E E Robinson
R A Foty
S A Corbett
Johnson University · US

Funding

HIGH THROUGHPUT HYDROLASE SCREENINGR43GM061487 · NIGMS · THERMOGEN,INC. · PI MORIS-VARAS, FRANCISCO · 2001 to 2001
$91k
NIGMS NIH HHS GM-061487
6 · The paper itself

Abstract

Oncogenic transformation has been associated with decreased fibronectin (FN) matrix assembly. For example, both the HT-1080 fibrosarcoma and MAT-LyLu cell lines fail to assemble a FN matrix when grown in monolayer culture (2-dimensional [2D] system). In this study, we show that these cells regain the ability to assemble a FN matrix when they are grown as aggregates (3-dimensional [3D] system). FN matrix assembly in 3D correlates with decreased Raf-1 protein expression compared with cells grown in monolayer culture. This effect is associated with reduced Raf-1 mRNA levels as determined by quantitative RT-PCR and not proteasome-mediated degradation of endogenous Raf-1. Interestingly, transient expression of a Raf-1 promoter-reporter construct demonstrates increased Raf-1 promoter activity in 3D, suggesting that the transition to 3D culture may modulate Raf-1 mRNA stability. Finally, to confirm that decreased Raf-1 expression results in increased FN matrix assembly, we used both pharmacological and small interfering RNA knockdown of Raf-1. This restored the ability of cells in 2D culture to assemble a FN matrix. Moreover, overexpression of Raf-1 prevented FN matrix assembly by cells cultured in 3D, resulting in decreased aggregate compaction. This work provides new insight into how the cell microenvironment may influence Raf-1 expression to modulate cell-FN interactions in 3D.

Indexed as

AnimalsCell Culture TechniquesDown-RegulationExtracellular MatrixExtracellular Signal-Regulated MAP KinasesFibronectinsFocal Adhesion Protein-Tyrosine KinasesGene Expression RegulationHumansOncogene Protein pp60(v-src)Proteasome InhibitorsProto-Oncogene Proteins c-rafRatsRNA, MessengerRNA, Small InterferingExtracellular Signal-Regulated MAP KinasesFibronectinsFocal Adhesion Protein-Tyrosine KinasesOncogene Protein pp60(v-src)Proteasome InhibitorsProto-Oncogene Proteins c-rafRNA, MessengerRNA, Small Interfering

Identifiers

PMID16707572
PMCPMC1525224
OpenAlexW2126850102

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.