Evidence map›Paper›PMID 16707014›Full record

ArticleTheoretical biology & medical modelling2006

Stochastic modeling of oligodendrocyte generation in cell culture: model validation with time-lapse data.

Ollivier Hyrien, Ibro Ambeskovic, Margot Mayer-Proschel, Mark Noble, Andrei Yakovlev

Abstract readValidation Study
In one paragraph

Article in Theoretical biology & medical modelling, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Ollivier HyrienDepartment of Biostatistics and Computational Biology, University of Rochester, 601 Elmwood Avenue, Rochester, New York 14642, USA. Ollivier_Hyrien@urmc.rochester.edu
Ibro Ambeskovic
Margot Mayer-Proschel
Mark Noble
Andrei Yakovlev

Funding

VISUAL INDICES OF NEUROTOXICITYP30ES001247 · NIEHS · UNIVERSITY OF ROCHESTER · PI Martha Susiarjo · 1985 to 2026
$42.8M
STOCHASTIC MODELING OF MULTI TYPE CELL SYSTEMSR01NS039511 · NINDS · UNIVERSITY OF UTAH · PI HYRIEN, OLLIVIER · 2001 to 2011
$3.2M
NIEHS NIH HHS P30 ES001247NIEHS NIH HHS P30 ES01247NINDS NIH HHS NS39511NINDS NIH HHS R01 NS039511
6 · The paper itself

Abstract

backgroundThe purpose of this paper is two-fold. The first objective is to validate the assumptions behind a stochastic model developed earlier by these authors to describe oligodendrocyte generation in cell culture. The second is to generate time-lapse data that may help biomathematicians to build stochastic models of cell proliferation and differentiation under other experimental scenarios.

resultsUsing time-lapse video recording it is possible to follow the individual evolutions of different cells within each clone. This experimental technique is very laborious and cannot replace model-based quantitative inference from clonal data. However, it is unrivalled in validating the structure of a stochastic model intended to describe cell proliferation and differentiation at the clonal level. In this paper, such data are reported and analyzed for oligodendrocyte precursor cells cultured in vitro.

conclusionThe results strongly support the validity of the most basic assumptions underpinning the previously proposed model of oligodendrocyte development in cell culture. However, there are some discrepancies; the most important is that the contribution of progenitor cell death to cell kinetics in this experimental system has been underestimated.

Indexed as

Models, BiologicalAlgorithmsAnimalsCell CycleCell DeathCell DifferentiationCell DivisionCells, CulturedCellular SenescenceLife TablesMonte Carlo MethodOligodendrogliaOptic NerveProbabilityRatsStatistics, NonparametricThyroid Hormones

Identifiers

PMID16707014
PMCPMC1481529

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.