Evidence map›Paper›PMID 16705162›Full record

ArticleMolecular and cellular biology2006

Sgs1 regulates gene conversion tract lengths and crossovers independently of its helicase activity.

Yi-Chen Lo, Kimberly S Paffett, Or Amit, Jennifer A Clikeman, Rosa Sterk, Mark A Brenneman, Jac A Nickoloff

Open access · greenAbstract read
In one paragraph

Article in Molecular and cellular biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 56 papers.

0numbers the graph read from it
0cells of the map it votes in
56citing papers in PubMed
3.9field-weighted citation impact, top 6% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

56 citing papers in PubMed, 76 citations in OpenAlex.

  1. Article
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  7. Efficient gene editing through an intronic selection marker in cells.Cellular and molecular life sciences : CMLS · 2022
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  11. Review
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  16. Novel insights into RAD51 activity and regulation during homologous recombination and DNA replication.Biochemistry and cell biology = Biochimie et biologie cellulaire · 2016
    Review
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Yi-Chen LoDepartment of Molecular Genetics and Microbiology, University of New Mexico School of Medicine, Albuquerque, NM 87131, USA.
Kimberly S Paffett
Or Amit
Jennifer A Clikeman
Rosa Sterk
Mark A Brenneman
Jac A Nickoloff
University of New Mexico · US

Funding

WOMEN'S CANCERS RESEARCH PROGRAMP30CA118100 · NCI · UNIVERSITY OF NEW MEXICO HEALTH SCIS CTR · PI Yolanda Sanchez · 2005 to 2026
$57.1M
FUNCTIONAL PROTEIN ANALYSIS--A SHARED RESOURCE FOR UNMR24CA088339 · NCI · UNIVERSITY OF NEW MEXICO · PI SKLAR, LARRY A. · 2001 to 2005
$1.5M
GENETIC AND PHYSICAL ANALYSIS OF RECOMBINATION REPAIRR01CA055302 · NCI · UNIVERSITY OF NEW MEXICO · PI NICKOLOFF, JAC A · 1992 to 2002
$866k
META DETECTOR &405 NM LASER: TUBERCULOSIS, PSEUDOMONAS IN CF REGULATION OF MUCOS10RR019287 · NCRR · UNIVERSITY OF NEW MEXICO · PI WANDINGER-NESS, ANGELA · 2004 to 2004
$363k
A CONFOCAL MICROSCOPE FOR HEALTH SCIENCES RESEARCHS10RR014668 · NCRR · UNIVERSITY OF NEW MEXICO · PI WANDINGER-NESS, ANGELA · 2000 to 2000
$300k
Zeiss Axiovert 2000 for Live Cell ImagingS10RR016918 · NCRR · UNIVERSITY OF NEW MEXICO · PI WANDINGER-NESS, ANGELA · 2002 to 2002
$135k
ENHANCING MULTIDISCIPLINARY BIOMEDICAL RESEARCHP20RR011830 · NCRR · UNIVERSITY OF NEW MEXICO · PI EATON, R P · 1996 to 1998
–
NCI NIH HHS CA55302NCI NIH HHS P30 CA118100NCI NIH HHS R24 CA088339NCI NIH HHS R24 CA88339NCRR NIH HHS P20 RR11830NCRR NIH HHS S10 RR016918NCRR NIH HHS S10 RR019287NCRR NIH HHS S10 RR14668NCRR NIH HHS S10 RR19287
6 · The paper itself

Abstract

RecQ helicases maintain genome stability and suppress tumors in higher eukaryotes through roles in replication and DNA repair. The yeast RecQ homolog Sgs1 interacts with Top3 topoisomerase and Rmi1. In vitro, Sgs1 binds to and branch migrates Holliday junctions (HJs) and the human RecQ homolog BLM, with Top3alpha, resolves synthetic double HJs in a noncrossover sense. Sgs1 suppresses crossovers during the homologous recombination (HR) repair of DNA double-strand breaks (DSBs). Crossovers are associated with long gene conversion tracts, suggesting a model in which Sgs1 helicase catalyzes reverse branch migration and convergence of double HJs for noncrossover resolution by Top3. Consistent with this model, we show that allelic crossovers and gene conversion tract lengths are increased in sgs1Delta. However, crossover and tract length suppression was independent of Sgs1 helicase activity, which argues against helicase-dependent HJ convergence. HJs may converge passively by a "random walk," and Sgs1 may play a structural role in stimulating Top3-dependent resolution. In addition to the new helicase-independent functions for Sgs1 in crossover and tract length control, we define three new helicase-dependent functions, including the suppression of chromosome loss, chromosome missegregation, and synthetic lethality in srs2Delta. We propose that Sgs1 has helicase-dependent functions in replication and helicase-independent functions in DSB repair by HR.

Indexed as

Gene Expression Regulation, FungalChromosome SegregationChromosomes, FungalCrossing Over, GeneticDNA DamageDNA HelicasesGene ConversionMethyl MethanesulfonateMutationRecQ HelicasesSaccharomyces cerevisiae ProteinsDNA HelicasesMethyl MethanesulfonateRecQ HelicasesSaccharomyces cerevisiae ProteinsSGS1 protein, S cerevisiaeSRS2 protein, S cerevisiae

Identifiers

PMID16705162
PMCPMC1489077
OpenAlexW2095701756

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.