Evidence map›Paper›PMID 16701802›Full record

ArticleGynecologic oncology2006

hMLH1 promoter methylation and silencing in primary endometrial cancers are associated with specific alterations in MBDs occupancy and histone modifications.

Yuning Xiong, Sean C Dowdy, Norman L Eberhardt, Karl C Podratz, Shi-Wen Jiang

Abstract read
In one paragraph

Article in Gynecologic oncology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
0.4field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yuning XiongDepartment of Obstetrics and Gynecology, Mayo Clinic and Foundation, Rochester, MN 55905, USA.
Sean C Dowdy
Norman L Eberhardt
Karl C Podratz
Shi-Wen Jiang
Mayo Clinic · US

Funding

Transcription Enhancer Factor Control of Placental GenesR01HD041577 · NICHD · MERCER UNIVERSITY MACON · PI JIANG, SHI-WEN · 2003 to 2007
$1.3M
STRUCTURE/FUNCTION OF GROWTH HORMONE RELATED GENER01DK041206 · NIDDK · UNIVERSITY OF CALIFORNIA SAN FRANCISCO · PI EBERHARDT, NORMAN L · 1989 to 2002
$764k
NCI NIH HHS L30 CA116948NICHD NIH HHS R01 HD041577NICHD NIH HHS R01 HD41577NIDDK NIH HHS R01 DK041206
6 · The paper itself

Abstract

objectiveTo investigate the relationship between hMLH1 promoter methylation and changes in chromatin composition. To study how the occupancy of methyl CpG binding domain proteins (MBDs) and histone acetylation/methylation in hMLH1 promoter may participate in hMLH1 silencing.

methods64 endometrial cancer samples were screened for hMLH1 mRNA expression. hMLH1 promoter methylation status was confirmed by methylation-specific PCR in cancers with high and low levels of hMLH1 expression. Chromatin immunoprecipitation was performed to compare the MBD occupancy and histone modifications between the methylated/silenced and unmethylated/active hMLH1 genes in multiple primary endometrial cancers.

resultsWe demonstrated that MeCP2, MBD1 and MBD2, but not MBD3 and MBD4, specifically bind to methylated hMLH1 promoters. Hyperacetylated histones H3 and H4 were found to be associated with the unmethylated and transcriptionally active hMLH1 promoters. While H3 lysine-4 methylation was present in unmethylated hMLH1 promoters, H3 lysine-9 methylation was found exclusively in methylated promoters. Western blot analysis showed that similar global levels of MBDs and histones were present in the two cancer groups with high and low hMLH1 expression.

conclusionsA distinct combination of MBDs and histone modification is associated with the silencing of the hMLH1 gene. The changes in hMLH1 chromatin composition are closely related to methylation status of hMLH1 promoters. These changes are not accounted by the global expression levels of MBDs and histones in endometrial cancers.

Indexed as

DNA MethylationGene SilencingAdaptor Proteins, Signal TransducingCarrier ProteinsChromatinChromatin ImmunoprecipitationDNA-Binding ProteinsEndometrial NeoplasmsFemaleHistonesHumansMethyl-CpG-Binding Protein 2MutL Protein Homolog 1Nuclear ProteinsPromoter Regions, GeneticRNA, MessengerAdaptor Proteins, Signal TransducingCarrier ProteinsChromatinDNA-Binding ProteinsHistonesMethyl-CpG-Binding Protein 2MLH1 protein, humanMutL Protein Homolog 1Nuclear ProteinsRNA, Messenger

Identifiers

PMID16701802
PMCPMC3273419
OpenAlexW2031694936

What OpenQuestion holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.