Evidence map›Paper›PMID 16699596›Full record

ArticlePLoS computational biology2006

Spatial regulation and the rate of signal transduction activation.

Nizar N Batada, Larry A Shepp, David O Siegmund, Michael Levitt

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 14 citations in OpenAlex.

  1. Unlocking the Potential of Stem Cell Microenvironments In Vitro.Bioengineering (Basel, Switzerland) · 2024
    Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. How gene order is influenced by the biophysics of transcription regulation.Proceedings of the National Academy of Sciences of the United States of America · 2007
    Article
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 3 institutions in 1 country.

Nizar N BatadaProgram in Biophysics, Stanford University, Stanford, California, USA. nizar.batada@utoronto.ca
Larry A Shepp
David O Siegmund
Michael Levitt
Stanford University · USRutgers, The State University of New Jersey · USStanford Medicine · US

Funding

Simulation and Prediction of Protein FoldingR37GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 2002 to 2012
$2.8M
SIMULATION OF PROTEIN UNFOLDING AND FOLDINGR01GM041455 · NIGMS · STANFORD UNIVERSITY · PI LEVITT, MICHAEL · 1989 to 2001
$361k
NIGMS NIH HHS GM41455NIGMS NIH HHS R01 GM041455NIGMS NIH HHS R37 GM041455
6 · The paper itself

Abstract

Of the many important signaling events that take place on the surface of a mammalian cell, activation of signal transduction pathways via interactions of cell surface receptors is one of the most important. Evidence suggests that cell surface proteins are not as freely diffusible as implied by the classic fluid mosaic model and that their confinement to membrane domains is regulated. It is unknown whether these dynamic localization mechanisms function to enhance signal transduction activation rate or to minimize cross talk among pathways that share common intermediates. To determine which of these two possibilities is more likely, we derive an explicit equation for the rate at which cell surface membrane proteins interact based on a Brownian motion model in the presence of endocytosis and exocytosis. We find that in the absence of any diffusion constraints, cell surface protein interaction rate is extremely high relative to cytoplasmic protein interaction rate even in a large mammalian cell with a receptor abundance of a mere two hundred molecules. Since a larger number of downstream signaling events needs to take place, each occurring at a much slower rate than the initial activation via association of cell surface proteins, we conclude that the role of co-localization is most likely that of cross-talk reduction rather than coupling efficiency enhancement.

Indexed as

Models, BiologicalSignal TransductionAnimalsCytoplasmDimerizationProteinsTime FactorsProteins

Identifiers

PMID16699596
PMCPMC1458967
OpenAlexW2083193004

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.