Evidence map›Paper›PMID 16699593›Full record

ArticlePLoS genetics2006

The leukocyte receptor complex in chicken is characterized by massive expansion and diversification of immunoglobulin-like Loci.

Katja Laun, Penny Coggill, Sophie Palmer, Sarah Sims, Zemin Ning, Jiannis Ragoussis, Emanuela Volpi, Natalie Wilson, Stephan Beck, Andreas Ziegler and 1 more

Open access · goldAbstract read
In one paragraph

Article in PLoS genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 71 citations in OpenAlex.

  1. Review
  2. Review
  3. Fourth Report on Chicken Genes and Chromosomes 2022.Cytogenetic and genome research · 2022
    Review
  4. The Genomic Organization of theFrontiers in immunology · 2021
    Review
  5. Review
  6. Article
  7. Article
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  12. Defense genes missing from the flight division.Developmental and comparative immunology · 2013
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Katja LaunInstitut für Immungenetik, Charité-Universitätsmedizin Berlin, Campus Virchow-Klinikum, Humboldt-Universität zu Berlin, Berlin, Germany.
Penny Coggill
Sophie Palmer
Sarah Sims
Zemin Ning
Jiannis Ragoussis
Emanuela Volpi
Natalie Wilson
Stephan Beck
Andreas Ziegler
Armin Volz
Wellcome Sanger Institute · GBCentre for Human Genetics · GBCharité - Universitätsmedizin Berlin · DEHumboldt-Universität zu Berlin · DE

Funding

Wellcome Trust
6 · The paper itself

Abstract

The innate and adaptive immune systems of vertebrates possess complementary, but intertwined functions within immune responses. Receptors of the mammalian innate immune system play an essential role in the detection of infected or transformed cells and are vital for the initiation and regulation of a full adaptive immune response. The genes for several of these receptors are clustered within the leukocyte receptor complex (LRC). The purpose of this study was to carry out a detailed analysis of the chicken (Gallus gallus domesticus) LRC. Bacterial artificial chromosomes containing genes related to mammalian leukocyte immunoglobulin-like receptors were identified in a chicken genomic library and shown to map to a single microchromosome. Sequencing revealed 103 chicken immunoglobulin-like receptor (CHIR) loci (22 inhibitory, 25 activating, 15 bifunctional, and 41 pseudogenes). A very complex splicing pattern was found using transcript analyses and seven hypervariable regions were detected in the external CHIR domains. Phylogenetic and genomic analysis showed that CHIR genes evolved mainly by block duplications from an ancestral inhibitory receptor locus, with transformation into activating receptors occurring more than once. Evolutionary selection pressure has led not only to an exceptional expansion of the CHIR cluster but also to a dramatic diversification of CHIR loci and haplotypes. This indicates that CHIRs have the potential to complement the adaptive immune system in fighting pathogens.

Indexed as

Alternative SplicingAnimalsChickensChromosome MappingChromosomes, Artificial, BacterialEvolution, MolecularGene LibraryGenomeHaplotypesImmunoglobulinsLeukocytesPhylogenyProtein Structure, TertiaryReceptors, ImmunologicImmunoglobulinsReceptors, Immunologic

Identifiers

PMID16699593
PMCPMC1458963
OpenAlexW1987947441

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.