ArticleBiophysical journal2006
Tryptophan rotamers as evidenced by X-ray, fluorescence lifetimes, and molecular dynamics modeling.
Article in Biophysical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.
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Who cites it
10 citing papers in PubMed.
- AlphaFold2-RAVE: From Sequence to Boltzmann Ranking.Journal of chemical theory and computation · 2023Article
- Thin-Plate Superstructures of the Immunogenic 33-mer Gliadin Peptide.Chembiochem : a European journal of chemical biology · 2022Article
- Advanced Spectroscopy and APBS Modeling for Determination of the Role of His190 and Trp103 in Mouse Thymidylate Synthase Interaction with Selected dUMP Analogues.International journal of molecular sciences · 2021Article
- Probing of carotenoid-tryptophan hydrogen bonding dynamics in the single-tryptophan photoactive Orange Carotenoid Protein.Scientific reports · 2020Article
- Orientation of tyrosine side chain in neurotoxic Aβ differs in two different secondary structures of the peptide.Royal Society open science · 2016Article
- Excited State Electron Distribution and Role of the Terminal Amine in Acidic and Basic Tryptophan Dipeptide Fluorescence.Journal of molecular structure · 2016Article
- Light-Enhanced Fluorescence of Multi-Level Cavitands Possessing Pyridazine Upper rim.Journal of fluorescence · 2016Article
- Structural and dynamic properties of juxta-membrane segments of caveolin-1 and caveolin-2 at the membrane interface.European biophysics journal : EBJ · 2010Article
- Tryptophan conformations associated with partial unfolding in ribonuclease T1.Biophysical journal · 2009Article
- An unusual red-edge excitation and time-dependent Stokes shift in the single tryptophan mutant protein DD-carboxypeptidase from Streptomyces: the role of dynamics and tryptophan rotamers.Protein science : a publication of the Protein Society · 2008Article
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5 authors.
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Abstract
We investigated the native-state dynamics of the Bacillus caldolyticus cold-shock protein mutant Bc-Csp L66E, using fluorescence and appropriate molecular dynamics methods. Two fluorescence lifetimes were found, the amplitudes of which agree very well with tryptophan rotamer populations, obtained from parallel tempering calculations. Rotamer lifetimes were predicted by transition-state theory from high-temperature simulations. Transition pathways were extracted from the transition rates between individual rotameric states. The molecular dynamics also reveal the loop fluctuations in the native state.
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