Evidence map›Paper›PMID 16690971›Full record

ArticleBlood2006

Interstitial uniparental isodisomy at clustered breakpoint intervals is a frequent mechanism of NF1 inactivation in myeloid malignancies.

Karen Stephens, Molly Weaver, Kathleen A Leppig, Kyoko Maruyama, Peter D Emanuel, Michelle M Le Beau, Kevin M Shannon

Open access · bronzeAbstract read
In one paragraph

Article in Blood, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 84 citations in OpenAlex.

  1. Review
  2. LNK/Haematologica · 2024
    Article
  3. Article
  4. Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. RAS diseases in children.Haematologica · 2014
    Review
  12. Central nervous system lymphoma occurring in a patient with neurofibromatosis type 1 (von Recklinghausen disease).Neurological sciences : official journal of the Italian Neurological Society and of the Italian Society of Clinical Neurophysiology · 2012
    Review
  13. Review
  14. Pathogenesis and consequences of uniparental disomy in cancer.Clinical cancer research : an official journal of the American Association for Cancer Research · 2011
    Review
  15. Article
  16. Review
  17. Article
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Karen StephensDepartment of Medicine, University of Washington, Medical Genetics 357720, Seattle, WA 98195, USA. millie@u.washington.edu
Molly Weaver
Kathleen A Leppig
Kyoko Maruyama
Peter D Emanuel
Michelle M Le Beau
Kevin M Shannon
University of Washington · USUniversity of Chicago · US

Funding

UCCRC--ETIOLOGY OF TREATMENT-INDUCED SECONDARY LEUKEMIAP01CA040046 · NCI · UNIVERSITY OF CHICAGO · PI LE BEAU, MICHELLE M · 1985 to 2012
$19.9M
Translational Investigation of NF1 in Myeloid LuekemiaR01CA072614 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHANNON, KEVIN M. · 1997 to 2006
$2.0M
LEUKEMIA THERAPY BASED ON ABNORMAL SIGNAL TRANSDUCTIONK24CA080916 · NCI · UNIVERSITY OF ALABAMA AT BIRMINGHAM · PI EMANUEL, PETER D · 1999 to 2003
$337k
NCI NIH HHS K24 CA80916NCI NIH HHS P01 CA40046NCI NIH HHS R01 CA72614
6 · The paper itself

Abstract

To identify the mechanism of loss of heterozygosity (LOH) and potential modifier gene(s), we investigated the molecular basis of somatic NF1 inactivation in myeloid malignancies from 10 children with neurofibromatosis type 1. Loci across a minimal 50-Mb region of primarily the long arm of chromosome 17 showed LOH in 8 cases, whereas a less than 9-Mb region of loci flanking NF1 had LOH in the remaining 2 cases. Two complementary techniques, quantitative polymerase chain reaction (PCR) and fluorescence in situ hybridization (FISH), were used to determine whether the copy number at loci that showed LOH was 1 or 2 (ie, deleted or isodisomic). The 2 cases with LOH limited to less than 9 Mb were intrachromosomal deletions. Among the 8 leukemias with 50-Mb LOH segments, 4 had partial uniparental isodisomy and 4 had interstitial uniparental isodisomy. These isodisomic cases showed clustering of the centromeric and telomeric LOH breakpoints. This suggests that the cases with interstitial uniparental isodisomy arose in a leukemia-initiating cell by double-homologous recombination events at intervals of preferred mitotic recombination. Homozygous inactivation of NF1 favored outgrowth of the leukemia-initiating cell. Our studies demonstrate that LOH analyses of loci distributed along the chromosomal length along with copy-number analysis can reveal novel mechanisms of LOH that may potentially identify regions harboring "cryptic" tumor suppressor or modifier genes whose inactivation contributes to tumorigenesis.

Indexed as

Chromosomes, Human, Pair 17Age of OnsetChild, PreschoolChromosome MappingFemaleHumansInfantIn Situ Hybridization, FluorescenceLeukemia, MyeloidLoss of HeterozygosityMaleNeurofibromatosis 1Neurofibromin 1Recombination, GeneticUniparental DisomyNeurofibromin 1

Identifiers

PMID16690971
PMCPMC1895516
OpenAlexW2088375930

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.