Evidence map›Paper›PMID 16689659›Full record

ArticleJournal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research2006

SARS-CoV virus-host interactions and comparative etiologies of acute respiratory distress syndrome as determined by transcriptional and cytokine profiling of formalin-fixed paraffin-embedded tissues.

Tracey Baas, Jeffery K Taubenberger, Pek Yoon Chong, Paul Chui, Michael G Katze

Abstract readComparative Study
In one paragraph

Article in Journal of interferon & cytokine research : the official journal of the International Society for Interferon and Cytokine Research, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 38 papers.

0numbers the graph read from it
0cells of the map it votes in
38citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

38 citing papers in PubMed, 55 citations in OpenAlex.

  1. Observational
  2. Article
  3. Review
  4. The role of IL-1 family of cytokines and receptors in pathogenesis of COVID-19.Inflammation research : official journal of the European Histamine Research Society ... [et al.] · 2022
    Article
  5. Article
  6. Article
  7. Article
  8. Post-COVID lung fibrosis: The tsunami that will follow the earthquake.Lung India : official organ of Indian Chest Society · 2021
    Review
  9. Review
  10. Review
  11. Psychosocial Vulnerabilities to Upper Respiratory Infectious Illness: Implications for Susceptibility to Coronavirus Disease 2019 (COVID-19).Perspectives on psychological science : a journal of the Association for Psychological Science · 2021
    Article
  12. Article
  13. Article
  14. Gene signatures of SARS-CoV/SARS-CoV-2-infected ferret lungs in short- and long-term models.Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases · 2020
    Article
  15. Article
  16. The Impact of COVID-19 on the Insurance Industry.International journal of environmental research and public health · 2020
    Article
  17. Review
  18. Blocking IL-1 to prevent respiratory failure in COVID-19.Critical care (London, England) · 2020
    Review
  19. Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Tracey BaasDepartment of Microbiology, School of Medicine, University of Washington, Seattle, WA 98195, USA.
Jeffery K Taubenberger
Pek Yoon Chong
Paul Chui
Michael G Katze
University of Washington · USArmed Forces Institute of Pathology · US

Funding

YILMA SIV VACCINIA VACCINE TRIALP51RR000166 · NCRR · UNIVERSITY OF WASHINGTON · PI HU, SHIU-LOK · 1985 to 2011
$161.1M
Viral and Host cDNA Libraries from 1918 Influenza CasesP01AI058113 · NIAID · MOUNT SINAI SCHOOL OF MEDICINE OF NYU · PI GARCIA-SASTRE, ADOLFO · 2004 to 2010
$20.3M
Mechanisms for viral evasion of innate immune responseP01AI052106 · NIAID · UNIVERSITY OF WASHINGTON · PI PALESE, PETER · 2002 to 2006
$3.4M
Influenza Viral Pathogenesis Z01AI000986 · NIAID · NIAID EXTRAMURAL ACTIVITIES · PI TAUBENBERGER, JEFFERY · 2007 to 2008
$1.9M
Intramural NIH HHS Z01 AI000986NCRR NIH HHS P51 RR000166NCRR NIH HHS P51RR00166NIAID NIH HHS P01 AI052106NIAID NIH HHS P01 AI058113
6 · The paper itself

Abstract

These studies attempt to understand more fully the host response and pathogenesis associated with severe acute respiratory syndrome (SARS) coronavirus (SARS-CoV) by monitoring gene expression using formalin-fixed paraffin-embedded (FFPE) pulmonary autopsy tissues. These tissues were from patients in different hospitals in Singapore who were diagnosed with various microbial infections, including SARS-CoV, that caused acute respiratory distress syndrome (ARDS). Global expression patterns showed limited correlation between end-stage ARDS and the initiating pathogen, but when focusing on a subset of genes implicated in pulmonary pathogenesis, molecular signatures of pulmonary disease were obtained and appeared to be influenced by preexisting pulmonary complications and also bacterial components of infection. Many factors detected during pulmonary damage and repair, such as extracellular matrix (ECM) components, transforming growth factor (TGF) enhancers, acute-phase proteins, and antioxidants, were included in the molecular profiles of these ARDS lung tissues. In addition, differential expression of cytokines within these pulmonary tissues were observed, including notable genes involved in the interferon (IFN) pathway, such as Stat1, IFN regulatory factor-1 (IRF-1), interleukin-6 (IL-6), IL-8, and IL-18, that are often characterized as elevated in ARDS patients.

Indexed as

Gene Expression ProfilingAgedAged, 80 and overAutopsyCytokinesFemaleFormaldehydeHost-Parasite InteractionsHumansInfantMaleMiddle AgedParaffin EmbeddingSevere Acute Respiratory SyndromeSevere acute respiratory syndrome-related coronavirusSignal TransductionCytokinesFormaldehyde

Identifiers

PMID16689659
PMCPMC4496958
OpenAlexW1992803487

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.