Evidence map›Paper›PMID 16686603›Full record

ArticleThe Biochemical journal2006

Anomalous scattering analysis of Agrobacterium radiobacter phosphotriesterase: the prominent role of iron in the heterobinuclear active site.

Colin J Jackson, Paul D Carr, Hye-Kyung Kim, Jian-Wei Liu, Paul Herrald, Natasa Mitić, Gerhard Schenk, Clyde A Smith, David L Ollis

Open access · greenAbstract read
In one paragraph

Article in The Biochemical journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.9field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 59 citations in OpenAlex.

  1. Review
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Determination of the catalytic activity of binuclear metallohydrolases using isothermal titration calorimetry.Journal of biological inorganic chemistry : JBIC : a publication of the Society of Biological Inorganic Chemistry · 2014
    Article
  8. Article
  9. Article
  10. Crystallization and preliminary X-ray diffraction analysis of the lactonase VmoLac from Vulcanisaeta moutnovskia.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  11. Crystallization and preliminary X-ray diffraction analysis of the organophosphorus hydrolase OPHC2 from Pseudomonas pseudoalcaligenes.Acta crystallographica. Section F, Structural biology and crystallization communications · 2013
    Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Conformational sampling, catalysis, and evolution of the bacterial phosphotriesterase.Proceedings of the National Academy of Sciences of the United States of America · 2009
    Article
  18. Article
  19. Structure-based rational design of a phosphotriesterase.Applied and environmental microbiology · 2009
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Colin J JacksonResearch School of Chemistry, Building 35, Australian National University, Canberra, ACT 0200, Australia.
Paul D Carr
Hye-Kyung Kim
Jian-Wei Liu
Paul Herrald
Natasa Mitić
Gerhard Schenk
Clyde A Smith
David L Ollis
Australian National University · AUUniversity of Queensland · AU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Bacterial phosphotriesterases are binuclear metalloproteins for which the catalytic mechanism has been studied with a variety of techniques, principally using active sites reconstituted in vitro from apoenzymes. Here, atomic absorption spectroscopy and anomalous X-ray scattering have been used to determine the identity of the metals incorporated into the active site in vivo. We have recombinantly expressed the phosphotriesterase from Agrobacterium radiobacter (OpdA) in Escherichia coli grown in medium supplemented with 1 mM CoCl2 and in unsupplemented medium. Anomalous scattering data, collected from a single crystal at the Fe-K, Co-K and Zn-K edges, indicate that iron and cobalt are the primary constituents of the two metal-binding sites in the catalytic centre (alpha and beta) in the protein expressed in E. coli grown in supplemented medium. Comparison with OpdA expressed in unsupplemented medium demonstrates that the cobalt present in the supplemented medium replaced zinc at the beta-position of the active site, which results in an increase in the catalytic efficiency of the enzyme. These results suggest an essential role for iron in the catalytic mechanism of bacterial phosphotriesterases, and that these phosphotriesterases are natively heterobinuclear iron-zinc enzymes.

Indexed as

Bacterial ProteinsBinding SitesCatalysisCobaltCrystallizationEscherichia coliIronPhosphoric Triester HydrolasesRecombinant ProteinsRhizobiumSpectrophotometry, AtomicX-Ray DiffractionZincBacterial ProteinsCobaltIronPhosphoric Triester HydrolasesRecombinant ProteinsZinc

Identifiers

PMID16686603
PMCPMC1533316
OpenAlexW1977016772

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.