Evidence map›Paper›PMID 16685648›Full record

ArticleAmerican journal of human genetics2006

Diplotype trend regression analysis of the ADH gene cluster and the ALDH2 gene: multiple significant associations with alcohol dependence.

Xingguang Luo, Henry R Kranzler, Lingjun Zuo, Shuang Wang, Nicholas J Schork, Joel Gelernter

Open access · bronzeAbstract read
In one paragraph

Article in American journal of human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 69 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
69citing papers in PubMed, 2 pooled it
6.6field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

69 citing papers in PubMed, 2 syntheses or guidelines pooled it, 117 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Trial
  4. Trial
  5. Variation in GABRA2 predicts drinking behavior in project MATCH subjects.Alcoholism, clinical and experimental research · 2007
    Trial
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  15. Distinct Prognostic Values of Alcohol Dehydrogenase Family Members for Non-Small Cell Lung Cancer.Medical science monitor : international medical journal of experimental and clinical research · 2018
    Article
  16. ADH1B: From alcoholism, natural selection, and cancer to the human phenome.American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics · 2018
    Review
  17. Article
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9 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 5 institutions in 1 country.

Xingguang LuoDepartment of Psychiatry, Yale University School of Medicine, New Haven, CT 06516, USA.
Henry R Kranzler
Lingjun Zuo
Shuang Wang
Nicholas J Schork
Joel Gelernter
Yale University · USColumbia University · USUniversity of California, San Diego · USUniversity of Connecticut · USVA Connecticut Healthcare System · US

Funding

Translational Technologies CoreP50AA012870 · NIAAA · YALE UNIVERSITY · PI Matthew J Girgenti · 2001 to 2026
$43.7M
ZONISAMIDE VERSUS PLACEBOM01RR006192 · NCRR · UNIVERSITY OF CONNECTICUT SCH OF MED/DNT · PI DRAZINIC, CAROLYN M · 1994 to 2008
$22.1M
Sex-specific analysis of opioid dependence GWAS and beyondR01DA012690 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2000 to 2017
$14.0M
GENETICS OF COCAINE DEPENDENCER01DA012849 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1999 to 2010
$11.5M
Linkage Disequilibrium Studies of Alcohol DependenceR01AA011330 · NIAAA · YALE UNIVERSITY · PI GELERNTER, JOEL · 1997 to 2013
$6.4M
Novel Approaches to Alcoholism Pharmacotherapy and RiskK24AA013736 · NIAAA · UNIVERSITY OF PENNSYLVANIA · PI KRANZLER, HENRY RICHARD · 2002 to 2012
$1.5M
MOLECULAR GENETIC FACTORS IN ALCOHOLISMK08AA013732 · NIAAA · YALE UNIVERSITY · PI LAPPALAINEN, JAAKKO A · 2002 to 2005
$636k
Approaches to the Genetics of Substance DependenceK24DA015105 · NIDA · YALE UNIVERSITY · PI GELERNTER, JOEL · 2003 to 2007
$603k
NEUROBIOLOGY AND GENETICS OF PANIC, TS, AND OCDK02MH001387 · NIMH · YALE UNIVERSITY · PI GELERNTER, JOEL · 1996 to 2001
$213k
NCRR NIH HHS M01 RR006192NCRR NIH HHS M01-RR06192NIAAA NIH HHS K08 AA013732NIAAA NIH HHS K08-AA13732NIAAA NIH HHS K24 AA013736NIAAA NIH HHS K24-AA13736NIAAA NIH HHS P50 AA012870NIAAA NIH HHS P50-AA12870NIAAA NIH HHS R01 AA011330NIAAA NIH HHS R01-AA11330NIDA NIH HHS K24 DA015105NIDA NIH HHS K24-DA15105NIDA NIH HHS R01 DA012690NIDA NIH HHS R01 DA012849NIDA NIH HHS R01-DA12690NIDA NIH HHS R01-DA12849NIMH NIH HHS K02-MH01387
6 · The paper itself

Abstract

The set of alcohol-metabolizing enzymes has considerable genetic and functional complexity. The relationships between some alcohol dehydrogenase (ADH) and aldehyde dehydrogenase (ALDH) genes and alcohol dependence (AD) have long been studied in many populations, but not comprehensively. In the present study, we genotyped 16 markers within the ADH gene cluster (including the ADH1A, ADH1B, ADH1C, ADH5, ADH6, and ADH7 genes), 4 markers within the ALDH2 gene, and 38 unlinked ancestry-informative markers in a case-control sample of 801 individuals. Associations between markers and disease were analyzed by a Hardy-Weinberg equilibrium (HWE) test, a conventional case-control comparison, a structured association analysis, and a novel diplotype trend regression (DTR) analysis. Finally, the disease alleles were fine mapped by a Hardy-Weinberg disequilibrium (HWD) measure (J). All markers were found to be in HWE in controls, but some markers showed HWD in cases. Genotypes of many markers were associated with AD. DTR analysis showed that ADH5 genotypes and diplotypes of ADH1A, ADH1B, ADH7, and ALDH2 were associated with AD in European Americans and/or African Americans. The risk-influencing alleles were fine mapped from among the markers studied and were found to coincide with some well-known functional variants. We demonstrated that DTR was more powerful than many other conventional association methods. We also found that several ADH genes and the ALDH2 gene were susceptibility loci for AD, and the associations were best explained by several independent risk genes.

Indexed as

Genetic Predisposition to DiseaseAdultAlcoholismAldehyde DehydrogenaseAldehyde Dehydrogenase, MitochondrialBlack or African AmericanCase-Control StudiesFemaleGenetic MarkersHumansMaleMiddle AgedMultigene FamilyRegression AnalysisRiskUnited StatesAldehyde DehydrogenaseAldehyde Dehydrogenase, MitochondrialALDH2 protein, humanGenetic Markers

Identifiers

PMID16685648
PMCPMC1474098
OpenAlexW1978162625

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.