Evidence map›Paper›PMID 16682563›Full record

ArticleRNA (New York, N.Y.)2006

Identification of small Hfq-binding RNAs in Listeria monocytogenes.

Janne K Christiansen, Jesper S Nielsen, Tine Ebersbach, Poul Valentin-Hansen, Lotte Søgaard-Andersen, Birgitte H Kallipolitis

Open access · bronzeAbstract read
In one paragraph

Article in RNA (New York, N.Y.), 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 91 papers.

0numbers the graph read from it
0cells of the map it votes in
91citing papers in PubMed
11.5field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

91 citing papers in PubMed, 167 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. An RNA-centric global view ofProceedings of the National Academy of Sciences of the United States of America · 2021
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  6. Review
  7. Adaptive Response ofFrontiers in microbiology · 2021
    Review
  8. RNA-Mediated Control inFrontiers in microbiology · 2021
    Review
  9. Review
  10. Article
  11. Review
  12. Regulation ofMicrobiology spectrum · 2019
    Review
  13. Article
  14. RNA-Dependent Regulation of Virulence in Pathogenic Bacteria.Frontiers in cellular and infection microbiology · 2019
    Review
  15. Article
  16. The Roles of TwoThe plant pathology journal · 2018
    Article
  17. Review
  18. Article
  19. Article
  20. Review

31 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Janne K ChristiansenDepartment of Biochemistry and Molecular Biology, University of Southern Denmark, Odense, Denmark.
Jesper S Nielsen
Tine Ebersbach
Poul Valentin-Hansen
Lotte Søgaard-Andersen
Birgitte H Kallipolitis
University of Southern Denmark · DKMax Planck Institute for Terrestrial Microbiology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The RNA-binding protein Hfq plays important roles in bacterial physiology and is required for the activity of many small regulatory RNAs in prokaryotes. We have previously shown that Hfq contributes to stress tolerance and virulence in the Gram-positive human pathogen Listeria monocytogenes. In the present study, we performed coimmunoprecipitations followed by enzymatic RNA sequencing to identify Hfq-binding RNA molecules in L. monocytogenes. The approach resulted in the discovery of three small RNAs (sRNAs). The sRNAs are conserved between Listeria species, but were not identified in other bacterial species. The initial characterization revealed a number of unique features displayed by each individual sRNA. The first sRNA is encoded from within an annotated gene in the L. monocytogenes EGD-e genome. Analogous to most regulatory sRNAs in Escherichia coli, the stability of this sRNA is highly dependent on the presence of Hfq. The second sRNA appears to be produced by a transcription attenuation mechanism, and the third sRNA is present in five copies at two different locations within the L. monocytogenes EGD-e genome. The cellular levels of the sRNAs are growth phase dependent and vary in response to growth medium. All three sRNAs are expressed when L. monocytogenes multiplies within mammalian cells. This study represents the first attempt to identify sRNAs in L. monocytogenes.

Indexed as

Base SequenceBinding SitesHalf-LifeHost Factor 1 ProteinKineticsListeria monocytogenesModels, MolecularMolecular Sequence DataNucleic Acid ConformationRNA, BacterialHost Factor 1 ProteinRNA, Bacterial

Identifiers

PMID16682563
PMCPMC1484441
OpenAlexW2149107007

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.