Evidence map›Paper›PMID 16680433›Full record

ArticleHuman genetics2006

Loss of function polymorphisms in NAT1 protect against spina bifida.

Liselotte E Jensen, Karen Hoess, Laura E Mitchell, Alexander S Whitehead

Abstract read
PubMed Publisher
In one paragraph

Article in Human genetics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
3.6field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. FloxedCells · 2024
    Article
  3. Article
  4. Article
  5. Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. NAT1, NOS3, and TYMS genotypes and the risk of conotruncal cardiac defects.Birth defects research. Part A, Clinical and molecular teratology · 2011
    Article
  12. Genetics of human neural tube defects.Human molecular genetics · 2009
    Review
  13. Article
  14. Article
  15. Review
  16. Deletion of a xenobiotic metabolizing gene in mice affects folate metabolism.Biochemical and biophysical research communications · 2007
    Article
  17. Article
  18. Ocular defects associated with a null mutation in the mouse arylamine N-acetyltransferase 2 gene.Mammalian genome : official journal of the International Mammalian Genome Society · 2007
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Liselotte E JensenDepartment of Pharmacology and Center for Pharmacogenetics, University of Pennsylvania School of Medicine, 153 Johnson Pavilion, 3620 Hamilton Walk, Philadelphia, PA 19104, USA.
Karen Hoess
Laura E Mitchell
Alexander S Whitehead
University of Pennsylvania · USTexas A&M University System · US

Funding

ZIDOVUDINE VS 2',3'DIDEHYDRO-3'DEOXYTHYMIDINE IN CHILDRENM01RR000240 · NCRR · CHILDREN'S HOSP OF PHILADELPHIA · PI ALTSCHULER, STEVEN M · 1985 to 2006
$15.3M
THE GENETICS OF SPINA BIFIDAR01HD039195 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI MITCHELL, LAURA E. · 2000 to 2010
$4.4M
MATERNAL, FETAL &ENVIRONMENTAL CAUSES OF BIRTH DEFECTSR01HD039081 · NICHD · UNIVERSITY OF PENNSYLVANIA · PI MITCHELL, LAURA E. · 2000 to 2004
$2.3M
NCRR NIH HHS M01-RR00240NICHD NIH HHS HD39081NICHD NIH HHS HD39195
6 · The paper itself

Abstract

Periconceptional folic acid supplementation reduces the risk of having a child with spina bifida. N-acetyltransferase 1 (NAT1) participates in the catabolism of folates and the acetylation of aromatic and heterocyclic amines. Hence, functional polymorphisms in NAT1, the gene encoding NAT1, could influence the risk of spina bifida via either folate catabolism or acetylation of exogenous agents. Individuals with spina bifida and their parents were genotyped for six NAT1 single nucleotide polymorphisms (SNPs) for which the less common allele is associated with reduced or absent enzyme activity (i.e. 97C>T, 190C>T, 559C>T/560G>A, 640T>G and 752A>T). In addition, a "composite" NAT1 genotype was defined as a function of the genotyped SNPs. Descriptive analyses of the SNPs and of the composite genotype indicated that heterozygous parents were more likely to transmit the common allele than the rare allele to their affected offspring. Furthermore, matings of mothers homozygous for the common allele and heterozygous fathers were more common than the reciprocal matings. Log-linear analyses confirmed that both the maternal (P = 0.008) and offspring (P = 0.003) composite NAT1 genotypes were significantly related to the risk of spina bifida. NAT1 variants that reduce or abolish enzyme activity appear to protect against spina bifida, and to exert their influence via both the maternal and the offspring genotypes. These associations may be attributable to a decrease in either folate catabolism or the conversion of exogenous agents to teratogenic derivatives in women and/or developing embryos with a NAT1 genotype that includes a loss of function allele relative to those who do not.

Indexed as

Polymorphism, Single NucleotideAdultArylamine N-AcetyltransferaseChildFamily HealthFemaleGene FrequencyGenotypeHumansIsoenzymesLikelihood FunctionsMaleNuclear FamilyRisk FactorsSpinal DysraphismArylamine N-AcetyltransferaseIsoenzymesN-acetyltransferase 1

Identifiers

PMID16680433
OpenAlexW2052773860

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.