ArticleBMC genomics2006
Derivation of species-specific hybridization-like knowledge out of cross-species hybridization results.
Article in BMC genomics, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.
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Who cites it
26 citing papers in PubMed.
- Extending Immunological Profiling in the Gilthead Sea Bream, Sparus aurata, by Enriched cDNA Library Analysis, Microarray Design and Initial Studies upon the Inflammatory Response to PAMPs.International journal of molecular sciences · 2017Article
- Between-species differences in gene copy number are enriched among functions critical for adaptive evolution in Arabidopsis halleri.BMC genomics · 2016Article
- A gene expression microarray for Nicotiana benthamiana based on de novo transcriptome sequence assembly.Plant methods · 2016Article
- Effect of cytokinins on delaying petunia flower senescence: a transcriptome study approach.Plant molecular biology · 2015Article
- Microarray analysis of tomato's early and late wound response reveals new regulatory targets for Leucine aminopeptidase A.PloS one · 2013Article
- Identification of putative ortholog gene blocks involved in gestant and lactating mammary gland development: a rodent cross-species microarray transcriptomics approach.International journal of genomics · 2013Article
- Single feature polymorphisms (SFPs) for drought tolerance in pigeonpea (Cajanus spp.).Functional & integrative genomics · 2011Article
- Normalization and centering of array-based heterologous genome hybridization based on divergent control probes.BMC bioinformatics · 2011Article
- Comparison of computational models for assessing conservation of gene expression across species.PloS one · 2010Article
- Transformation of metabolism with age and lifestyle in Antarctic seals: a case study of systems biology approach to cross-species microarray experiment.BMC systems biology · 2010Article
- Transcriptome analysis in non-model species: a new method for the analysis of heterologous hybridization on microarrays.BMC genomics · 2010Article
- Differential transcript expression between the microfilariae of the filarial nematodes, Brugia malayi and B. pahangi.BMC genomics · 2010Article
- A Method to Detect Differential Gene expression in Cross-Species Hybridization Experiments at Gene and Probe Level.Biomedical informatics insights · 2010Article
- Article
- Application of chicken microarrays for gene expression analysis in other avian species.BMC genomics · 2009Article
- A comprehensive analysis of gene expression evolution between humans and mice.Evolutionary bioinformatics online · 2009Article
- Global Expression Patterns of Three Festuca Species Exposed to Different Doses of Glyphosate Using the Affymetrix GeneChip Wheat Genome Array.Comparative and functional genomics · 2009Article
- Single-species microarrays and comparative transcriptomics.PloS one · 2008Article
- Duplications and functional divergence of ADP-glucose pyrophosphorylase genes in plants.BMC evolutionary biology · 2008Article
- Changes in brain gene expression during migration in the white-crowned sparrow.Brain research bulletin · 2008Article
Corrections and comments
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Authors and funding
6 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
backgroundOne of the approaches for conducting genomics research in organisms without extant microarray platforms is to profile their expression patterns by using Cross-Species Hybridization (CSH). Several different studies using spotted microarray and CSH produced contradicting conclusions in the ability of CSH to reflect biological processes described by species-specific hybridization (SSH).
resultsWe used a tomato-spotted cDNA microarray to examine the ability of CSH to reflect SSH data. Potato RNA was hybridized to spotted cDNA tomato and potato microarrays to generate CSH and SSH data, respectively. Difficulties arose in obtaining transcriptomic data from CSH that reflected those obtained from SSH. Nevertheless, once the data was filtered for those corresponding to matching probe sets, by restricting proper cutoffs of probe homology, the CSH transcriptome data showed improved reflection of those of the SSH.
conclusionsThis study evaluated the relative performance of CSH compared to SSH, and proposes methods to ensure that CSH closely reflects the biological process analyzed by SSH.
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