Evidence map›Paper›PMID 16675949›Full record

ArticleThe EMBO journal2006

Displacement of D1, HP1 and topoisomerase II from satellite heterochromatin by a specific polyamide.

Roxane Blattes, Caroline Monod, Guillaume Susbielle, Olivier Cuvier, Jian-hong Wu, Tao-shih Hsieh, Ulrich K Laemmli, Emmanuel Käs

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
2.0field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 62 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Heterochromatin-based silencing of a foreign tandem repeat inbioRxiv : the preprint server for biology · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Sequence, Chromatin and Evolution of Satellite DNA.International journal of molecular sciences · 2021
    Review
  15. Article
  16. Article
  17. Review
  18. Molecular Mechanisms and Therapeutics for the GAA·TTC Expansion Disease Friedreich Ataxia.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2019
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 3 countries.

Roxane BlattesLaboratoire de Biologie Moléculaire Eucaryote, UMR 5099 CNRS-Université Paul Sabatier, Toulouse Cedex, France.
Caroline Monod
Guillaume Susbielle
Olivier Cuvier
Jian-hong Wu
Tao-shih Hsieh
Ulrich K Laemmli
Emmanuel Käs
Université Toulouse III - Paul Sabatier · FRCentre National de la Recherche Scientifique · FRDuke University Hospital · USUniversity of Geneva · CH

Funding

FUNCTION AND MECHANISM OF DNA TOPOISOMERASER01GM029006 · NIGMS · DUKE UNIVERSITY · PI HSIEH, TAO-SHIH · 1985 to 2010
$5.5M
NIGMS NIH HHS GM29006NIGMS NIH HHS R01 GM029006
6 · The paper itself

Abstract

The functions of DNA satellites of centric heterochromatin are difficult to assess with classical molecular biology tools. Using a chemical approach, we demonstrate that synthetic polyamides that specifically target AT-rich satellite repeats of Drosophila melanogaster can be used to study the function of these sequences. The P9 polyamide, which binds the X-chromosome 1.688 g/cm3 satellite III (SAT III), displaces the D1 protein. This displacement in turn results in a selective loss of HP1 and topoisomerase II from SAT III, while these proteins remain bound to the adjacent rDNA repeats and to other regions not targeted by P9. Conversely, targeting of (AAGAG)n satellite V repeats by the P31 polyamide results in the displacement of HP1 from these sequences, indicating that HP1 interactions with chromatin are sensitive to DNA-binding ligands. P9 fed to larvae suppresses the position-effect variegation phenotype of white-mottled adult flies. We propose that this effect is due to displacement of the heterochromatin proteins D1, HP1 and topoisomerase II from SAT III, hence resulting in stochastic chromatin opening and desilencing of the nearby white gene.

Indexed as

AnimalsAT Rich SequenceBase SequenceBrainChromosomal Proteins, Non-HistoneDNA-Binding ProteinsDNA, SatelliteDNA Topoisomerases, Type IIDrosophila melanogasterDrosophila ProteinsEmbryonic StructuresEmbryo, NonmammalianFemaleHeterochromatinMolecular Sequence DataNylonsChromosomal Proteins, Non-HistoneD1 protein, DrosophilaDNA-Binding ProteinsDNA, SatelliteDNA Topoisomerases, Type IIDrosophila ProteinsHeterochromatinheterochromatin protein 1, DrosophilaNylons

Identifiers

PMID16675949
PMCPMC1478169
OpenAlexW2106900737

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.