Evidence map›Paper›PMID 16672627›Full record

ArticleJournal of bacteriology2006

Helicobacter pylori initiates the stringent response upon nutrient and pH downshift.

Derek H Wells, Erin C Gaynor

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 41 papers.

0numbers the graph read from it
0cells of the map it votes in
41citing papers in PubMed
3.0field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

41 citing papers in PubMed, 54 citations in OpenAlex.

  1. Article
  2. Microbiology spectrum · 2025
    Article
  3. Article
  4. Microbiology and molecular biology reviews : MMBR · 2024
    Review
  5. Article
  6. Biofilm ofAntibiotics (Basel, Switzerland) · 2023
    Review
  7. SpoT-mediated NapA upregulation promotes oxidative stress-inducedAntimicrobial agents and chemotherapy · 2023
    Article
  8. Mutating bothFrontiers in microbiology · 2023
    Article
  9. Microorganisms · 2022
    Article
  10. Pathophysiology of enteropathogenicJournal of veterinary science · 2022
    Review
  11. Article
  12. Article
  13. Review
  14. Observational
  15. Article
  16. Article
  17. (p)ppGpp and Its Role in Bacterial Persistence: New Challenges.Antimicrobial agents and chemotherapy · 2020
    Review
  18. Article
  19. Article
  20. Clinical and laboratory importance of detectingPrzeglad gastroenterologiczny · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors at 1 institution in 1 country.

Derek H WellsDepartment of Biological Sciences, Stanford University, California, USA.
Erin C Gaynor
Stanford University · US

Funding

REGULATION OF NODULATION GENES IN RHIZOBIUM MELILOTIR37GM030962 · NIGMS · STANFORD UNIVERSITY · PI LONG, SHARON R · 1993 to 2002
$1.0M
RHIZOBIUM NODULATION GENE EXPRESSION AND GENE PRODUCTSR01GM030962 · NIGMS · STANFORD UNIVERSITY · PI LONG, SHARON R · 1985 to 1992
–
NIGMS NIH HHS GM30962
6 · The paper itself

Abstract

Helicobacter pylori was previously reported to lack a stringent response. In contrast, we show that after nutrient downshift, H. pylori produced abundant ppGpp and less total RNA. pH downshift also caused (p)ppGpp accumulation. Our observations indicate that nutrient deprivation and acid shock activate the stringent response in H. pylori.

Indexed as

Culture MediaHydrogen-Ion ConcentrationGuanosine TetraphosphateHelicobacter pyloriKineticsRNA, BacterialRNA, Small InterferingCulture MediaGuanosine TetraphosphateRNA, BacterialRNA, Small Interfering

Identifiers

PMID16672627
PMCPMC1482847
OpenAlexW2148409350

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.