Evidence map›Paper›PMID 16672500›Full record

ArticleApplied and environmental microbiology2006

Population dynamics within a microbial consortium during growth on diesel fuel in saline environments.

Sabine Kleinsteuber, Volker Riis, Ingo Fetzer, Hauke Harms, Susann Müller

Abstract read
In one paragraph

Article in Applied and environmental microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed.

  1. Article
  2. Review
  3. Article
  4. Article
  5. Review
  6. Article
  7. Article
  8. Diversity and Niche of Archaea in Bioremediation.Archaea (Vancouver, B.C.) · 2018
    Review
  9. Review
  10. Article
  11. Article
  12. Article
  13. Biodegradation of organic pollutants in saline wastewater by halophilic microorganisms: a review.Environmental science and pollution research international · 2014
    Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Sabine KleinsteuberUFZ Centre for Environmental Research Leipzig-Halle, Department of Environmental Microbiology, Permoserstrasse 15, 04318 Leipzig, Germany.
Volker Riis
Ingo Fetzer
Hauke Harms
Susann Müller

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The diversity and dynamics of a bacterial community extracted from an exploited oil field with high natural soil salinity near Comodoro Rivadavia in Patagonia (Argentina) were investigated. Community shifts during long-term incubation with diesel fuel at four salinities between 0 and 20% NaCl were monitored by single-strand conformation polymorphism community fingerprinting of the PCR-amplified V4-V5 region of the 16S rRNA genes. Information obtained by this qualitative approach was extended by flow cytometric analysis to follow quantitatively the dynamics of community structures at different salinities. Dominant and newly developing clusters of individuals visualized via their DNA patterns versus cell sizes were used to identify the subcommunities primarily involved in the degradation process. To determine the most active species, subcommunities were separated physically by high-resolution cell sorting and subsequent phylogenetic identification by 16S rRNA gene sequencing. Reduced salinity favored the dominance of Sphingomonas spp., whereas at elevated salinities, Ralstonia spp. and a number of halophilic genera, including Halomonas, Dietzia, and Alcanivorax, were identified. The combination of cytometric sorting with molecular characterization allowed us to monitor community adaptation and to identify active and proliferating subcommunities.

Indexed as

GasolineSodium ChlorideSoil MicrobiologyArgentinaBiodegradation, EnvironmentalDNA, BacterialEcosystemGenes, rRNAGram-Negative BacteriaMolecular Sequence DataPhylogenyPolymorphism, Single-Stranded ConformationalPopulation DynamicsRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialGasolineRNA, Ribosomal, 16SSodium Chloride

Identifiers

PMID16672500
PMCPMC1472369

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.