Evidence map›Paper›PMID 16672405›Full record

ArticleJournal of clinical microbiology2006

Evaluation of the GenoType Mycobacterium Assay for identification of mycobacterial species from cultures.

Elvira Richter, Sabine Rüsch-Gerdes, Doris Hillemann

Abstract readEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 55 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
55citing papers in PubMed, 1 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

55 citing papers in PubMed, 1 synthesis or guideline pooled it.

  1. Pooled it
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Review
  10. Article
  11. Article
  12. High rate of reinfection and possible transmission ofOne health (Amsterdam, Netherlands) · 2022
    Article
  13. Misidentification ofJournal of clinical tuberculosis and other mycobacterial diseases · 2021
    Article
  14. SystemicPathogens (Basel, Switzerland) · 2020
    Article
  15. Article
  16. Pulmonary non-tuberculous mycobacterial infections: current state and future management.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2020
    Review
  17. Article
  18. Rapid Identification of Clinically RelevantJournal of clinical microbiology · 2019
    Article
  19. Cutaneous Manifestations ofCurrent tropical medicine reports · 2018
    Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Elvira RichterForschungszentrum Borstel, National Reference Center for Mycobacteria, Parkallee 18, D-23845 Borstel, Germany.
Sabine Rüsch-Gerdes
Doris Hillemann

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A new commercially available DNA strip assay (GenoType Mycobacterium CM/AS; Hain Lifescience, Nehren, Germany) was evaluated for the ability to differentiate mycobacterial species. The test is based on a PCR technique targeting a 23S rRNA gene region, followed by reverse hybridization and line probe technology. The GenoType CM is capable of identifying 23, the GenoType AS a further 14, species either alone or in combination with one or more species. Both tests were evaluated with 156 mycobacterial strains composed of 61 validly published species including different subspecies, 6 not validly published species, and 3 strains other than mycobacterial species. All strains were precharacterized by sequencing of the 5' region of the 16S rRNA gene and biochemical tests. In total, results for 151 strains were interpretable. Concordant results were obtained for 137 (92.6%) of 148 mycobacterial strains with the CM assay and 133 (89.9%) of 148 mycobacterial strains with the AS assay, and all three non-Mycobacterium species were identified.

Indexed as

Bacteriological TechniquesAnimalsCattleGenotypeGermanyHumansMycobacteriumPolymerase Chain ReactionRNA, BacterialRNA, Ribosomal, 16SRNA, Ribosomal, 23SSpecies SpecificityRNA, BacterialRNA, Ribosomal, 16SRNA, Ribosomal, 23S

Identifiers

PMID16672405
PMCPMC1479216

What OpenQuestion holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.