Evidence map›Paper›PMID 16672403›Full record

ArticleJournal of clinical microbiology2006

Human papillomavirus type 16 integration in cervical carcinoma in situ and in invasive cervical cancer.

Hugo Arias-Pulido, Cheri L Peyton, Nancy E Joste, Hernan Vargas, Cosette M Wheeler

Open access · greenAbstract read
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 98 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
98citing papers in PubMed, 1 pooled it
11.3field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

98 citing papers in PubMed, 1 synthesis or guideline pooled it, 241 citations in OpenAlex.

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38 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Hugo Arias-PulidoDepartment of Molecular Genetics and Microbiology, School of Medicine, Health Sciences Center, University of New Mexico, Albuquerque, NM 87111, USA.
Cheri L Peyton
Nancy E Joste
Hernan Vargas
Cosette M Wheeler
Instituto Nacional de Cancerología · COUniversity of New Mexico · US

Funding

PCR-BASED NATURAL HISTORY STUDY OF HPV INFECTIONSR01AI032917 · NIAID · UNIVERSITY OF NEW MEXICO · PI WHEELER, COSETTE M · 1991 to 1999
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NIAID NIH HHS AI32917
6 · The paper itself

Abstract

Integration of human papillomavirus type 16 (HPV-16) into the host DNA has been proposed as a potential marker of cervical neoplastic progression. In this study, a quantitative real-time PCR (qRT-PCR) was used to examine the physical status of HPV-16 in 126 cervical carcinoma in situ and 92 invasive cervical cancers. Based on criteria applied to results from this qRT-PCR assay, HPV-16 was characterized in carcinoma in situ cases as episomal (61.9%), mixed (i.e., episomal and integrated; 29.4%), and integrated (8.7%) forms. In invasive cervical cancer samples, HPV-16 was similarly characterized as episomal (39.1%), mixed (45.7%), and integrated (15.2%) forms. The difference in the frequency of integrated or episomal status estimated for carcinoma in situ and invasive cervical cancer cases was statistically significant (P = 0.003). Extensive mapping analysis of HPV-16 E1 and E2 genes in 37 selected tumors demonstrated deletions in both E1 and E2 genes with the maximum number of losses (78.4%) observed within the HPV-16 E2 hinge region. Specifically, deletions within the E2 hinge region were detected most often between nucleotides (nt) 3243 and 3539. The capacity to detect low-frequency HPV-16 integration events was highly limited due to the common presence and abundance of HPV episomal forms. HPV-16 E2 expressed from intact episomes may act in trans to regulate integrated genome expression of E6 and E7.

Indexed as

Virus IntegrationBase SequenceCell LineChromosome MappingDNA-Binding ProteinsDNA PrimersDNA, ViralFemaleGene RearrangementGenes, ViralHuman papillomavirus 16HumansMolecular Sequence DataOncogene Proteins, ViralPlasmidsPolymerase Chain ReactionDNA-Binding ProteinsDNA PrimersDNA, ViralE1 protein, Human papillomavirus 16E2 protein, Human papillomavirus type 16Oncogene Proteins, Viral

Identifiers

PMID16672403
PMCPMC1479176
OpenAlexW2102994752

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.