Evidence map›Paper›PMID 16672384›Full record

ArticleJournal of clinical microbiology2006

Comparison of a conventional antimicrobial susceptibility assay to an oligonucleotide chip system for detection of drug resistance in Mycobacterium tuberculosis isolates.

Heekyung Park, Eun Ju Song, Eun Sil Song, Eun Yup Lee, Cheol Min Kim, Seok Hoon Jeong, Jeong Hwan Shin, Joseph Jeong, Sunjoo Kim, Young Kil Park and 2 more

Open access · greenAbstract readComparative StudyEvaluation Study
In one paragraph

Article in Journal of clinical microbiology, 2006. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
2.6field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Prevalence of mutations in genes associated with rifampicin and isoniazid resistance inJournal of clinical tuberculosis and other mycobacterial diseases · 2017
    Article
  4. DNA microarrays for the diagnosis of infectious diseases.Medecine et maladies infectieuses · 2012
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 6 institutions in 1 country.

Heekyung ParkInstitute for Genomic Medicine, GeneIn Co., Ltd., Busan, Korea.
Eun Ju Song
Eun Sil Song
Eun Yup Lee
Cheol Min Kim
Seok Hoon Jeong
Jeong Hwan Shin
Joseph Jeong
Sunjoo Kim
Young Kil Park
Gill-Han Bai
Chulhun L Chang
Korea National Tuberculosis Association · KRGyeongsang National University · KRInje University · KRKosin University · KRPusan National University · KRUlsan University Hospital · KR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

An oligonucleotide chip (Combichip Mycobacteria chip) detecting specific mutations in the rpoB, katG, and inhA genes of Mycobacterium tuberculosis was compared with conventional antimicrobial susceptibility results. The probes detecting drug resistance were as follows: 7 wild-type and 13 mutant probes for rifampin and 2 wild-type and 3 mutant probes for isoniazid. Target DNA of M. tuberculosis was amplified by PCR, followed by hybridization and scanning. Direct sequencing was performed to verify the results of the oligonucleotide chip. One-hundred seven of 115 rifampin-resistant strains (93%) had mutations in the rpoB gene. Eighty-five of 119 isoniazid-resistant strains (71%) had mutations in the katG gene or inhA gene. The diagnostic oligonucleotide chip with mutation-specific probes is a reliable and useful tool for the rapid and accurate diagnosis of resistance against rifampin and isoniazid in M. tuberculosis isolates.

Indexed as

Antibiotics, AntitubercularAntitubercular AgentsBacterial ProteinsBase SequenceCatalaseDNA, BacterialDNA-Directed RNA PolymerasesDNA ProbesDrug Resistance, BacterialGenes, BacterialHumansIsoniazidMicrobial Sensitivity TestsMutationMycobacterium tuberculosisOligonucleotide Array Sequence AnalysisAntibiotics, AntitubercularAntitubercular AgentsBacterial ProteinsCatalaseDNA, BacterialDNA-Directed RNA PolymerasesDNA ProbesInhA protein, MycobacteriumIsoniazidkatG protein, Mycobacterium tuberculosisOxidoreductasesRifampinrpoB protein, Mycobacterium tuberculosis

Identifiers

PMID16672384
PMCPMC1479202
OpenAlexW2118549345

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.